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47 protocols using sca 1

1

Isolation and Characterization of Murine Mesenchymal Stromal Cells

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A total of 107 bone marrow mononuclear cells were seeded in 10-cm dishes with DMEM low glucose (Sigma-Aldrich) containing 15% FBS, 10 μM hydrocortisone, 100 μM β-mercaptoethanol, 100 IU/ml pen/strep, and L-glutamine and incubated at 37°C, 5% CO2 under humidified conditions for 14–21 days. Non-adherent cells were removed every other day, and fresh medium was added. The mesenchymal stromal cell characteristics were determined by FACS analysis for the expression CD45.2 (Becton Dickinson; 558702), CD11b (Becton Dickinson, 550993), CD106 (Becton Dickinson; 561613), Sca1 (eBioscience; 56-5981-82), and CD34 (Becton Dickinson; 560238) markers. After 8 days of incubation, colonies of 50 cells or more (CFU-F) were counted by light microscopy in four different plates per genotype, and alkaline phosphatase colony-forming unit (CFU-ALP) assays were carried out using the SIGMA 86R kit. Osteogenic and adipogenic differentiation assays of MSC are described in the Appendix Supplementary Methods.
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2

Mesenchymal Stem Cell Characterization

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For flow cytometry, ASC were dissociated with trypsin-EDTA, washed once and ressuspended in PBS 0.5% BSA. Staining was done in a 100 μL volume per tube for 30 minutes at 4°C. Primary antibodies were diluted at 1:100 and were against the following antigens: CD90.2, Sca-1, CD105, CD73 and CD45 (all from eBioscience). Samples were acquired in BD FACSAria IIu and analyzed in FlowJo 9.4.10.
For osteogenic differentiation, cells were submitted to a 21-day culture protocol with DMEM supplemented with 10% FBS, penicillin-streptomycin, 10−6 μM of dexamethasone, 10 mM of β-glycerophosphate and 0.5 μM of ascorbic acid. After this period, cells were fixed and stained with Alizarin Red 1%. Adipogenic differentiation protocol was identical, except for β-glycerophosphate and ascorbic acid that were substituted for 200 μM of indomethacin, 10 μg/mL of human insulin and 0.5 mM of isobutyl-methylxanthine (all reagents from Sigma-Aldrich). Staining was performed with Oil Red O 0.5%.
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Isolation and Characterization of Murine Bone Marrow-Derived Mesenchymal Stem Cells

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MSCs were isolated from the bone marrow of 4 ~ 6-week C57BL/6 mice under aseptic conditions. Briefly, bone marrow cells were separated and collected by flushing the bone marrow cavity from femurs and tibiae of mice. After red blood cells were lysed, the remaining cells were resuspended and cultured in L-DMEM complete medium containing 10% FBS at 37 °C and 5% CO2 incubator for 8–10 days. MSCs of passage 5 were detected by FACS for MSC surface antigens CD29 (eBioscience, 17-0291-80), CD44 (eBioscience, 12-0441-81), CD105 (eBioscience, 12-1051-81), SCA-1 (eBioscience, 45-5981-82), hematopoietic stem cells and endothelial cell markers CD45 (BD Pharmingen, 550994), CD31 (BD Pharmingen, 553372), CD34 (BD Pharmingen, 560230) and their isotypes. These cells were confirmed as MSCs by validating that they could differentiate into osteoblasts and adipocytes. All of the mBMSCs used in this study were collected in passages 3 to 8.
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4

Multicolor Flow Cytometry Immunophenotyping

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Labeling of cell surface antigens was performed as previously described (McKim et al., 2017 ; Sawicki et al., 2017 ). In brief, Fc receptors were blocked with anti-CD16/CD32 antibody (BD Biosciences). Cells were washed and then incubated with the appropriate antibodies (CD45, CD11b, Sca-1, eBioscience; Ly6C, Ly6G, Ter119, CD3, B220, BD Biosciences) for 1 h at 4°C. Cells were washed and then re-suspended in PBS for analysis. Cell numbers were estimated using counting beads (Invitrogen; Carlsbad, CA). Non-specific binding was assessed using isotype matched antibodies. Antigen expression was determined using a Becton-Dickinson FACSCalibur cytometer (BD Biosciences) with a nine-color upgrade (Cytek Biosciences; Fremont, CA). Data were analyzed using FlowJo software (Tree Star; Ashland, OR) and positive labeling for each antibody was determined based on isotype stained controls.
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5

Flow Cytometry Analysis of Periosteal Cells

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Cell surface markers analysis was performed using phycoerythrin-conjugated antibodies against Sca-1 (eBioscience 11:5781-81), CD29 (eBioscience 12:0291-81), CD105 (eBioscience 12:1051-82), CD140, (eBioscience 14:1401-82) CD11b (eBioscience 12:0112-81), CD34 (eBioscience 14:0341-81) and CD45 (eBioscience 14:0451-81), followed by flow cytometry using a FACSAria II system (BD Biosciences, San Jose, CA, USA) in the CGMH Core facility. Voltages and gates were set based on unstained periosteum samples from Cre-negative animals.
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6

Reagents for Mesenchymal Stem Cell Differentiation

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Reagents for inducing MSC differentiation, including 3-isobutyl-1-methylxanthine, l-ascorbic acid, indomethacin, dexamethasone, insulin, β-glycerophosphate, Alizarin Red S, and Oil Red O were purchased from Sigma–Aldrich (St. Louis, MO, U.S.A.). Antibodies used in Western blotting analysis were: AKT, pAKT, pP38, pP65, pJNK, pERK and GAPDH (Cell Signaling Technology, Danvers, MA, U.S.A.). Fluorescence antibodies used in flow cytometry were: CD45, CD31, F4/80, MHCII I-A, MHCI KbDb, Sca1 and CD44 (eBioscience, Thermo Fisher, U.S.A.).
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7

Plasmid Construction for LEMP Gene

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To construct the LEMP-HA, Flag-LEMP plasmids, the corresponding sequence was HA or Flag tagged and inserted into the pHAGE-fEF1a-IRES-ZsGreen vector. LEMPΔATG-HA plasmid was obtained using mutagenesis. To construct LEMP-Flag-px330, a single-guide RNA (sgRNA) specific to the C-terminal coding sequence of mLEMP locus was cloned into the px330. The donor plasmid was made with a Flag tag in-frame with the LEMP coding sequence and flanked by ~500 base pair homology arms specific to the LEMP locus. The zebrafish cDNA of LEMP gene was amplified and cloned into pCS2+ vector. To construct the plasmid used for synthesis of antisense RNA probe, the relevant sequence of LEMP was cloned into pCS2+ vector. To make the construct of LAT-EGFP, the zLEMP-AMO targeting sequence was inserted into the corresponding start codon region of EGFP in pCS2+ vector.
The antibodies against Flag (Sigma, F3165), HA (Sigma, H6908), GAPDH (Abcam, ab8245), MHC (Upstate, 05-715), Mitotracker (Invitrogen, M7510), Gm130 (BD, 610823), Calnexin (Santa Cruz, SC-6465), LEMP (ABclonal, A18310), CD31 (BD, 562861), CD45 (eBioScience, 45-0451-82), CD11B (eBioScience, 45-0112-82), Sca1 (eBioScience, 56-5981-82), CD34 (BD, 553733), and integrin-α-APC (R&D, FAB3518A) were purchased.
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8

Characterization of Murine Macrophages

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To investigate the expression of TLT-6 in primary cells, cells were harvested from the bone marrow and bone marrow-derived and peritoneal macrophages were collected, and washed twice in staining buffer (PBS, 0.01% NaN3, and 2% FBS). Cells were stained with fluorescence (FITC, PE, or APC)-, biotin-conjugated hematopoietic-specific monoclonal antibodies (CD4, CD3, CD8, B220, Gr-1, Mac-1, c-Kit, Sca-1, CD11b, Ter-119, and CD11c), or matched isotype controls purchased from eBiosciences (Sand Diego, CA, USA). Macrophages derived from the peritoneum or bone marrow were activated by LPS. Red cells were lysed, and nonspecific binding was blocked by preincubation with nonconjugated antibody to CD16/32. Dead cells were excluded by propidium iodide staining. Whole cells stained were analyzed using FACSVantage SE (BD Biosciences).
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9

Isolation and Culture of Murine LSK Cells

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BM cell suspensions were prepared from the femur whose cavity was washed and then crushed for cell collection. The LSK (LinSca-1+c-Kit+) cells were prepared by labeling BM lineage cells suspensions obtained by magnetic bead (STEMCELL) with a mixture of monoclonal antibodies against Sca-1 (1:200, eBioscience), c-Kit (1:200, eBioscience), CD11b (1:400, eBioscience), Gr-1 (1:400, eBioscience), B220 (1:200, eBioscience), CD3 (1:200, eBioscience), TER-119 (1:200, eBioscience), Annexin V (1:50, BD), Propidium Iodide (PI, 1:200, BD). Fluorescence-activated cell analysis was performed on an LSRFortessa cell analyzer (Becton Dickinson). Fluorescence-activated cell sorting was performed on a FACSAriaII Flow Cytometer (Becton Dickinson). Data were analyzed by using FlowJo™ (Tree Star).
CFC was conducted as previously described [31 ]. It was performed in MethoCult GF M3434 (STEMCELL) containing with 600∼700 LSK cells. After incubating the cells for 14 days, the scored for colony formation was conducted.
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10

Immunophenotyping of Murine Bone Marrow

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BM samples were collected from the femurs and tibias of mice and then lysed with erythrocyte lysing buffer. The remaining cells were first stained with Fixable Viability Stain 510 (FVS510; BD Bioscience). For blood cell lineage detection, the cells were stained with lineage antibodies against CD3e, CD11b, Ter-119, B220, Gr-1 and matched isotype controls (eBioscience). To examine the percentages of LSK (LinSca-1+c-Kit+) cells, BM cells were stained with biotin-labelled lineage antibodies and then incubated with streptavidin APC-eFluor® 780-labelled secondary antibody (eBioscience), along with BV605-labelled anti-mouse Sca-1 (BD Bioscience) and APC-labelled c-Kit (eBioscience). For the detection of engraftment and chimerism, the BM cells were stained with PE or FITC-labelled antibodies against CD45.1 or CD45.2 (eBioscience). All samples were detected by BD FACS Aria (BD Bioscience).
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