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8 protocols using bisindolylmaleimide 1

1

Integrin-mediated Signaling Pathway Analysis

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All reagents unless otherwise specified were from Sigma-Aldrich. Wortmannin, Ly294002, rottlerin, bisindolylmaleimide i, bisindolylmaleimide ix, Gö6983 were from Cayman Chemical. P11, GRGDSP, GRADSP, αvβ3 function blocking antibody (LM609) were from EMD Millipore. PP1, PP2, PP3 were from Calbiochem. LDH assay was from Promega. Phospho-MARCKS Ser152/156 (Cat#2741), MARCKS (Cat#5607), Phospho-PI3K (Cat#4228), p85 PI3K (Cat#4257), Phospho-PKCδ (Cat#2055), PKCd (Cat#9616) antibodies were from Cell Signaling Technology. FITC-PIP3 antibody (Cat#G345) was from Echelon. All secondary antibodies and isotype controls were from Life Technologies.
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2

Pleural Mesothelioma Cell Line Validation

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Human pleural MM cell lines, H2373, H2595, and HP-1 were kindly contributed by Dr. Harvey Pass (New York University, New York, NY)48 (link) and Hmeso cells were isolated by Reale et al.49 (link). Human primary pleural mesothelial cells HPM3 and human immortalized peritoneal mesothelial LP9/TERT-1 (LP9) cells were purchased from Brigham and Women’s Hospital, Harvard University, Boston, MA.
All cell lines were cultured as previously reported50 (link). Cell lines were validated by STR DNA fingerprinting using the Promega CELL ID System (Promega, Madison, WI)50 (link).
Cisplatin was purchased from Alfa Aesar (Ward Hill, MA) and concentrations for the present study were selected based on previously published literature for MM cells51 (link). GW4869, Cl-amidine (chloramidine), and bisindolylmaleimide-I were purchased from Cayman Chemical (Ann Arbor, MI) and used at concentrations based on published reports indicating successful inhibition of exosome release from cells34 (link),35 (link). DMSO in equal volume added to control wells as vehicle control.
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3

Inhibition of NETosis Pathways

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Specific inhibitors described previously were used for blockage of NET formation and have been described previously23 (link),34 (link),40 (link),46 (link),90 (link)–94 (link). The following inhibitors were used: the NE inhibitor Suc-Ala-Ala-Pro-Val chloromethyl ketone (CMK; 1 mM final concentration, Sigma), NADPH oxidase (NOX) inhibitor diphenylene iodonium (DPI; 10 μM final concentration, Sigma), the MPO inhibitor 4-Aminobenzoic acid hydrazide (ABAH; 100 μM final concentration, Sigma), TLR4 signaling inhibitor CLI-095 (1 μg/mL final concentration; InvivoGen), the TLR4 signaling inhibitor polymixin B (100 μg/mL final concentration; InvivoGen, San Diego, CA), the PKC inhibitor Bisindolylmaleimide I (310 nM final concentration, Cayman Chemical, Ann Arbor, MI), and the ROS scavenger inhibitor ascorbic acid (Vitamin C) (200 μM final concentration, Cayman Chemical, Ann Arbor, MI). Cells were pre-incubated with inhibitors for 30 min at 37 °C prior to stimulation as described above23 (link),34 (link).
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4

Comprehensive Molecular Analysis of Cell Signaling

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All reagents were purchased from Sigma-Aldrich unless otherwise specified. Bisindolylmaleimide I was purchased from Cayman Chemical. [3H]glucosamine was purchased from PerkinElmer. All fluorescent reagents, including WGA-Alexa 647, CFSE, and CellMask Deep Red, and secondary antibodies were from Thermo. Caspase 3, caspase 9, and PARP were from Cell Signaling. Enzyme-linked immunosorbent assay (ELISA) DuoSet kits for IL-1β, IL-1α, and TNF-α as well as the anti-Vamp8 antibody were from R&D. VAMP8-pHluorin was a kind gift from Rytis Prekeris (University of Colorado), and pmRuby2-MUC2CK was synthesized by Genscript as previously described (15 (link), 20 (link), 22 (link)). Mouse 41-plex cytokine arrays were constructed by Eve Technologies on the basis of tissue lysates normalized to 1 mg/ml.
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5

TNF-α Signaling Pathway Regulation

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Recombinant human tumor necrosis-α (TNF-α) was from Peprotech (Rocky Hill, NJ). U0126, SB-203580, and bisindolylmaleimide I were from Cayman Chemical (Ann Arbor, MI). BAY 11–7082 was from Focus Biomolecules (Plymouth Meeting, PA). Goat anti-rabbit IgG-HRP was from GE Healthcare Japan Corporation (Tokyo, Japan). Antibodies for phospho-NF-κB p65 (Ser536) (93H1) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (14C10) were from Cell Signaling Technology (Danvers, MA). Fatty acid-free bovine serum albumin (BSA) was from EMD chemicals (San Diego, CA). Dexamethasone (DEX), Dulbecco’s Modified Eagle Medium (DMEM), and other chemicals were purchased from Sigma-Aldrich (St. Louis, MO).
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6

Cell Line Authentication and Maintenance Protocol

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PC9 cells were from Kyushu University, Japan. EVSA-T and MKN-45 cells were from DSMZ. All other cell lines were from American Type Culture Collection. All cell lines were banked at the Genentech cell line core facility that routinely performs single nucleotide polymorphism (SNP) and short tandem repeats (STR) analysis to confirm cell line identity and detect possible mycoplasma contamination. PC9 cells were cultured in RPMI medium (Gibco) containing 4.5 g l−1 of D-glucose and supplemented with 10% fetal bovine serum, 2 mM L-glutamine, and 100 U ml−1 of penicillin and streptomycin. All other cell lines were maintained in RPMI medium (Gibco) supplemented with 10% fetal bovine serum, 2 mM L-glutamine, and 100 U ml−1 of penicillin and streptomycin. Lapatinib was from LC Laboratories, cinnamycin was from Sigma, AACOCF3 was from Santa Cruz Biotechnology, paclitaxel was from US Biologicals, carboplatin was from Selleckchem, AZ628 was from Tocris Bioscience, Bisindolylmaleimide I, XI and XI were from Cayman Chemicals, PKC-20-28 was from EMD Millipore, phorbol-12-myristate13-acetate was from VWR Scientific, and erlotinib and GDC-0980 were synthesized at Genentech.
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7

Bladder Contractility Pharmacological Modulators

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Tetrodotoxin, phentolamine, iberiotoxin, NS-1619, Y-27632, apamin, NS-309, and ryanodine were purchased from Abcam (Cambridge, MA, USA). Atropine, propranolol, suramin, nisoldipine, and SKF-96365 were purchased from Sigma-Aldrich (St. Louis, MO USA). Bisindolylmaleimide 1 and H2O2 were obtained from Cayman Chemical (Ann Arbor, MI, USA) and Fisher Scientific (Pittsburg, PA, USA), respectively.
NS-1619, nisoldipine, NS 309, and SKF-96365 were dissolved in dimethylsulphoxide (DMSO). ryanodine was dissolved in 100% ethanol. All other drugs were prepared with water. Final ethanol and DMSO concentrations in the bath solution did not exceed 0.1% and were shown not to affect spontaneous contractions or bladder function in previous reports [35 (link)–37 (link)].
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8

Lipid and Cell Signaling Pathways Analysis

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Oleic, palmitic, palmitoleic, linoleic, and methyl oleic acids, 5-bromo-2’-deoxyuridine (BrdU), etomoxir (Sigma), CAY10587, bisindolylmaleimide-1 (Cayman Chemical, Ann Arbor, MI), U0126 (Cell Signaling Technology, Danvers, MA), PKCζ myristolated pseudo substrate (Enzo Life Science, Plymouth Meeting, PA), triacsin C (Santa Cruz Biotechnology, Dallas, Santa Cruz, CA), GO-6976 (Tocris Bioscience, Bristol, UK) were purchased commercially.
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