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The D3305 is a laboratory equipment designed for centrifugation purposes. It is a compact and versatile centrifuge that can accommodate a wide range of sample volumes and tube sizes. The device is built with high-quality materials and features a user-friendly interface for easy operation.

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6 protocols using d3305

1

Patch Electrophysiology and Single-Cell Electroporation

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Experiments were performed on a patch electrophysiology rig under an Olympus microscope with differential interference contrast optics and immersion lenses. Pipettes were back loaded with plasmid DNA, fluorescent dextran (tetramethylrhodamine‐ or fluoroscein‐conjugated dextran (3000 MW, Invitrogen # D3307 and D3305, respectively, 1–3% in 0.9% NaCl), or neurobiotin (1–2% in 0.9% NaCl) and mounted on the recording headstage. Brain slices were placed in the recording chamber and perfused at 1–2 mL per minute. The pipette tip was guided onto the surface of the target cell until a dimple was formed. Pipette patency was maintained with positive pressure as required. Following electroporation the pipette was carefully retracted from the cell and reused until clogging occurred.
The same approach was used for transfection of neurons in organotypic culture, except pipettes were filled with freshly filtered plasmid DNA in 0.9% NaCl (0.3–3 μg/μL). SCE of organotypic cultures was typically completed within 15 min. Transfected neurons were washed in fresh media and restored to the incubator for 24–48 h before fixation and imaging of reporter‐expressing neurons.
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2

Tracing Brain Perivascular Clearance

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Three kDa fluorescein isothiocyanate (FITC)-labelled dextran (3 k-FITC, D3305, Invitrogen) and 40 kDa tetramethylrhodamine (TMR)-labelled dextran (40 k-TMR, D1842, Invitrogen) was dissolved in aCSF and delivered through cisterna magna (CM). 3 k-FITC has a molecular weight similar to that of the Aβ monomer and is known to have access to the brain independent of AQP4. 40 k-TMR is suitable to examine the perivascular CSF influx affected by AQP4. During the experiment, the heart rate was monitored with a set of three platinum needle electrodes connected to the data acquisition system iX228s (Iworx). The head was fixed to the stereotactic frame, and the head and neck were positioned at 120°. After incising the dorsal neck skin, the neck muscles were exposed with a retractor to access the atlanto-occipital membrane overlying the CM. A disposable 30 G needle was carefully inserted and fixed with a cyanoacrylate bond while avoiding contact with the medulla or cerebellum. The solution was delivered by an automatic syringe pump (KD Scientific) for 5 min at 2 µl/min and cardiac perfusion was performed 30 min after the injection [48 (link)].
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3

Glymphatic System Tracer Perfusion

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The glymphatic function was assessed by intracisternal injection of the fluorescent tracer. Mice were anesthetized initially using isoflurane (5% oxygen) and then placed on a stereotactic framework, with the anesthetic maintained at approximately 1.5% (oxygen). The posterior atlanto-occipital membrane was surgically exposed, and a 32-G needle attached to a Hamilton syringe was inserted into the cerebellar cisterna. The apparatus contains 1% glucan, luciferin, and biotin-labeled 3 kDa soluble lysine fixative (D3305, Invitrogen) dissolved in mouse artificial cerebrospinal fluid (Harvard Apparatus) and injected at a concentration of 5 µg/µL in 5 min (the total volume is 10 µL) at a rate of 2 µL/min. The needle was immobilized for 10 min and then removed, and the atlanto-occipital membrane was sealed to avoid any CSF reflux. The brain was sliced into sections measuring 100 µm in thickness. The inflow of the tracer was monitored through employment of a laser scanning confocal microscope (NIS-elements, AX, Tokyo, Japan).
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4

Intravital Imaging of Intestinal Epithelium

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Mice were anesthetized by an IP injection of a mixture of ketamine (100 mg kg−1) and xylazine (20 mg kg−1). The small intestine was surgically externalized, and the epithelium was exposed via a small incision in an area devoid of intestinal content. During the procedure, the epithelial tissue was constantly moistened by applying saline. The anesthetized mouse was placed on the microscopic stage and covered with a heated pad (37 °C) to maintain body temperature. Fixable fluorescent dextran conjugates of 3 or 2000 kDa in size (ThermoFisher D-3305 or D7137) were injected directly into the intestinal lumen via the incision, and the externalized epithelium was then positioned on a coverslip mounted on the stage above the objective and immobilized using custom-made holders. The blood flow was assessed visually by using the eyepiece and only regions close to blood vessels were imaged. The microscope used was a NIKON TiE inverted fluorescence microscope equipped with a Yokogawa CSU-21 spinning disc head and an Andor DU-897 camera. NIKON Elements software was used for image analysis.
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5

Quantifying Salt Stress Response in Yeast

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The flow experiments were performed in Ibidi chambers (µ-Slide VI 0.4, Ibidi). Two 50 ml Falcon tube reservoirs containing SD-full +0.5 µg/ml fluorescein-dextran (D3305, ThermoFischer) and SD-full +0.6 M NaCl were put under a pressure of 30 mbar (FlowEZ, Fluigent). The media coming from each reservoir were connected using FEP tubing (1/16″ OD × 0.020″ ID, Fluigent) to a 3-way valve (2-switch, Fluigent). The concentration of NaCl in the medium was controlled using a Pulse-Width Modulation strategy66 ,67 . Periods of 4 s were used and within this time, the valve controlled the fraction of time when SD-full versus SD-full + NaCl was flowing. TTL signals generated by an Arduino Uno board and dedicated scripts were used to control precisely the switching of the valve. The fluorescein present in the SD-full medium quantified outside the Cell object provided an estimate of the NaCl concentration in the medium. Some strong fluctuations in this signal were probably generated by dust particles in the imaging oil or FLSN-dextran aggregates in the flow chamber. Following 24 h log-phase growth, cells bearing the pSTL1-PP7sl reporter, Hog1-mCherry, and Hta2-tdiRFP tags were diluted to OD 0.2, briefly sonicated and loaded in the ibidi channel previously coated by Concanavalin A. Cells were left to settle in the channel for 10 min before SD-full flow was started.
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6

Vivo-Morpholino Knockdown in Zebrafish

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Vivo-MOrpholino (Vivo-MO) treatments were performed as previously described with slight modifications (Konantz and Antos, 2014; Wehner et al., 2017) . Briefly, custom-designed Vivo-MOs (Gene Tools) were dissolved in PBS at a concentration of 0.5 mM. Vivo-MOs were incubated for 5 min at 65 C prior preparation of the injection mix containing 0.475 mM Vivo-MO and 0.125 mg/ml fluorescently-labelled dextran (3000 MW; Thermo-Fisher Scientific #D3305, Thermo-Fisher Scientific #D3329). Approximately a total of 10 nl injection mix (10 repetitive injections of 1 nl each) was microinjected into the pericardial vein of 3 dpf larvae immediately before lesion. Larvae that showed strong and ubiquitous fluorescence at 2-3 h post-injection were subsequently lesioned. Sequences of translation blocking Vivo-MOs used are as follows. cthrc1a Vivo-MO 1: 5'-GTACCCATCATTACCGAAATGCAGT-3', cthrc1a Vivo-MO 2: 5'-CAGTTAGTTTGGTCGCTCCTGCTCT-3', cthrc1a Vivo-MO 3: 5'-TCTGCTGCCAACCAACTGTTTCTTA-3', tnfaip6 Vivo-MO: 5'-TCAGTCCGCAGTGGCTCATACAG-3'. cthrc1a MO 2 and cthrc1a MO 3 have recently been established in zebrafish (Cheng et al., 2019) . As control, a standard Vivo-MO from Gene Tools targeting a mutated splice site of human b-globin was used: 5'-CCTCTTACCTCAGTTACAATTTATA-3'.
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