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14 protocols using l gln

1

Generation and Characterization of HD Mouse Models

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YAC128 HD mice and WT littermates were obtained from The Jackson Laboratory (Bar Harbor, ME, USA; JAX Mice #004938, FVBN/J background). Additionally, for the assessment of fibroblast reprogramming, we generated a crossbreed of YAC128 and Oct-eGFP mice (Lengner et al., 2007 (link)) (JAX Mice #008214, B6;129S4/SvJae background). The cultured mouse adult fibroblasts were derived from back-skin biopsies of 8- to 10-week-old mice. Briefly, the skin fibroblasts were cultured using the explant technique in HEPES-buffered DMEM (Sigma-Aldrich, St Louis, MO, USA) supplemented with 10% FBS originating from New Zealand (Sigma-Aldrich), 2 mM L-Gln (Sigma-Aldrich), 1× antibiotic-antimycotic mixture (Sigma-Aldrich) and 10 μg/ml L-ascorbic acid (Sigma-Aldrich). Human HD fibroblasts, line GM04281, were obtained from Coriell (Coriell Cell Repository, Camden, NJ, USA). The protocols for the maintenance and handling of the animals were approved and monitored by the Local Ethical Commission for Animal Experiments in Poznan.
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2

Metabolic Profiling of Cancer Cells

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U13C labelled L-Gln (Cambridge Isotope Laboratories CLM-1822-H-0.1), L-Gln (Sigma, G3126), Glu (Sigma, G1626). CB-839 (Calithera Biosciences), BSO (Cayman Chemical, #14484), Methotrexate (Sigma, #A6770), Albendazole (Sigma, #A0325100), 17-AAG (Sigma, #A8476), Etomoxir (Cayman Chemical, #11969), BPTES (Sigma, #SML0601), MG-132 (Sigma, SML1135).
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3

Anti-inflammatory Effects of L-Glutamine on Chondrocytes

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According to a previous study, the administration of L-Gln (0, 5, 10, and 20 mM) to lipopolysaccharide (LPS)-stimulated human dental pulp cells has a concentration-dependent anti-inflammatory effect [28 (link)]. Therefore, chondrocytes (5 × 103 cells/well) were seeded in 96-well plates and treated with the same concentrations of L-Gln (Biofroxx, Germany; 0, 5, 10, and 20 mM) for 24 and 48 h. Because IL-1β can reduce the viability of chondrocytes in vitro [37 (link)], the cells were pre-treated with 10 ng/ml IL-1β (PeproTech, Suzhou, China) for 2 h [38 (link)], followed by treatment with different concentrations of L-Gln (0, 5, 10, and 20 mM) for another 24 and 48 h. Cell viability was measured with the Cell Counting Kit-8 (CCK-8; Sigma-Aldrich, St. Louis, MO, U.S.A.), and absorbances were measured at 492 nm using a Rayto RT-6100 microplate reader.
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4

Preparation of Amino Acid-Deficient Media

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Amino acid-free (AA−) medium was prepared by RPMI 1640 powder (R8999–04A, US Biological Life Science) and sodium phosphate dibasic (5.6 mM, the same concentration as commercially available RPMI 1640 medium, US Biological Life Science), supplemented with 10% (v/v) dialyzed FBS (Thermo Fisher Scientific). Amino acid-sufficient (AA+) medium was prepared by adding proper volumes of MEM amino acids solution (essential amino acids, EAA, 50×), MEM non-essential amino acids solution (NEAA, 100×), and 200 mM L-Gln (all from Sigma-Aldrich) to AA− medium to reach a final concentration of 1×EAA, 1×NEAA, and 2 mM Gln. The medium was supplemented with 10% (v/v) dialyzed FBS. Medium containing single amino acids (Ala, Leu, Gln, or Arg) or their combinations was prepared with AA– medium (prepared to the same concentrations present in the AA+ medium). All media were adjusted to pH7.5 and filter-sterilized (0.2 μm) before use.
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5

Acetate Buffer Preparation and Sample Preparation

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35.7 ml of 0.1M acetic acid was added to 64.3 ml of 0.1M sodium acetate to give 100 ml of 0.1M acetate buffer with a pH of 4.96 as measured with a pH meter (UB-10, Denver Instruments). Samples of 10 mM L- Gln, L-Glu, AS, GABA, L-Asn and L-Asp (all from Sigma-Aldrich, St Louis, MO, USA) were prepared in 0.1M acetate buffer and the final pH of all the samples were within 4.96 ± 0.04 units.
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6

Bovine Dermal Mesenchymal Stem Cell Isolation

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The skin was isolated from the dorsal of the bovine fetus and rinsed 6–10 times in PBS, and digested for 12 h at 4°C using 0.25% collagenase type II. After rinsing the digested skin tissues 6–10 times in PBS, the epidermis tissues were gently scraped off, and rinsed 3–5 times in PBS with 1% (w/v) penicillin and streptomycin (Bioss). The remaining derma was cut into about 1 mm3 pieces using an ophthalmic scissors, and digested for 15 min at 37°C with 0.25% (w/v) Tyrisin (Gibco) [containing 0.01% (w/v) EDTA]. Then DMEM (Dulbecco's modified Eagle's medium) (Gibco) containing 10% (v/v) FBS (fetal bovine serum, Hyclone) was added to terminate the reaction. The cell suspension was centrifuged at 100 g for 8 min, the cells were resuspended with complete medium [(DMEM/F12+ 10% FBS +10 ng/ml bFGF (basic fibroblast growth factor, Peprotech)+2 mM/ml L-Gln (Sigma)] glutamine and seeded in a cell culture dish. Cells were cultured in a 5% (v/v) CO2 incubator at 37°C for 2 h, and then the cell suspension was transferred to 6-well plates, and continued to culture at 37°C in 5% CO2. When the cells reached 80–90% confluence, 0.25% trypsin and 0.02% EDTA were added to the digested cells and subcultured at a ratio of 1:1. The morphology and growth situation of cattle DMSCs was observed by an inverted microscope.
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7

Chondrocyte Isolation and Primary Culture

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Primary culture follows published methods for chondrocytes38 (link),39 (link). In short, MCC was collected from 10–20 day old mice in CO2 independent collection medium (Gibco, 18045–088), washed in 1x sterile PBS supplemented with 25 mg/ml Plasmocin (InVivoGen, ant-mmp), 50 U/ml penicillin and 0.05 mg/ml streptomycin (Sigm, P0781) for 5 minutes, transferred to a 3 mg/ml type II collagenase (Worthington Biochemical, LS004174) in DMEM (Gibco, 11966–025) digestion medium for one hour, and then transferred to a 1 mg/ml collagenase digestion medium overnight in 5% CO2 at 37 °C. All cell medium and washes were supplemented with 25 mg/ml Plasmocin (InVivoGen, ant-mmp), 50 U/ml penicillin and 0.05 mg/ml streptomycin (Sigm, P0781), and 2mM L-Gln (Sigma, G7513). After digestion, cells were dispersed by agitation with a serological pipette, filtered through a 40 µm cell strainer, centrifuged at 10,000 g for 15 minutes at room temperature, the pellet was re-suspended in supplemented sterile 1x PSB, and centrifuged again. The resulting pellet was re-suspended in 10 ml of FBS supplemented advanced DMEM (Gibco 12492–013). Cell density was calculated with a hemocytometer, and cells were plated at 10 × 104 cells/cm2 with a glass cover slip. Culture medium was replaced every two days until confluence at approximately 8 days.
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8

Glutaminase Inhibitor CB839 Effects on 18F-Gln Uptake

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HCC1806 (25,000 cells/well) and MCF-7 (30,000 cells/well) were attached to a 96-well plate overnight. CB839 stock solution (10 mM in DMSO) was serially diluted in complete media to 1 µM (final DMSO concentration was 0.05%) and incubated with cells for 4 h. Control cells were incubated in media containing 0.05% DMSO. To study tracer uptake, the culture media was replaced by PBS (with Ca++ and Mg++ to facilitate normal cell functions such as uptake and attachment) containing 5 mM glucose, 100 µM L-Gln (Sigma), 1 µM CB839 (or 0.05% DMSO), plus [18F]4F-Gln ligand (~300,000 cpm/well in nano- to pico-molar concentration). At specified time points (5, 15, 30, 60 and 120 min), supernatant was aspirated and the wells were washed twice with cold PBS (without Ca++ and Mg++). Samples are counted on the gamma counter (2470 WIZARD2, Perkin Elmer, Waltham, MA) and the amount of protein per well was estimated by the Lowry method. Of note, owing to reversible nature of GLS inhibition mediated by CB839, the drug was present during tracer uptake period. The concentration of cold L-Gln was optimized to 100 µM so that it did not block [18F]4F-Gln uptake while preventing the tracer from being depleted during the 2-hour uptake study.
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9

Optimizing Bladder Cancer Cell Growth

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The bladder cancer cell line, T24, purchased from the Cell Bank of the Chinese Academy of Sciences, was routinely cultured in RPMI-1640 medium (BI) containing 2 g/l glucose and 300 mg/l Gln. The assay medium was modified Eagle's medium (BI) without glucose or Gln reconstituted with 2 g/l of glucose. Both media were supplemented with 10% fetal bovine serum and 1% penicillin and streptomycin. The cells were grown at 37°C in a humidified 5% CO2 atmosphere. L-Gln (Sigma-Aldrich), D-(+)-glucose (Sigma-Aldrich), 0-100 µM 6-diazo-5-oxo-L-norleucine (Don) (Sigma-Aldrich), 0-10 mM N-acetylcysteine (NAC) (MCE), 2 mM L-glutamic acid dimethyl ester hydrochloride (Glu) (Sigma-Aldrich) and 2 mM dimethyl αKG (Sigma-Aldrich) were used during the experiment. The reagents were dissolved either in ultrapure water or directly in modified Eagle's medium (BI) according to the manufacturer's indications. All drugs and reagents were administered to adherent cells in fresh assay medium.
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10

BCLC9 Cell Culture and Maintenance

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BCLC9 cells were generated as previously described12. Standard culture medium for BCLC9 cell lines is Dulbecco's Modified Eagle Medium (DMEM) high glucose (Sigma-Aldrich, St Louis, MO) and HAM F12 (Sigma-Aldrich, St Louis, MO) (1:1). Medium is supplemented with: 1% Na Pyruvate 100 mM (Sigma-Aldrich, St Louis, MO), 1% Pen/Strep 10000 U/mL (Lonza Group Ltd, Switzerland), 1% L-Gln 200 mM (Sigma-Aldrich, St Louis, MO), 1% Non-Essential Aminoacids (NEAA) (Lonza Group Ltd, Switzerland), 10% FBS (Life Technologies). BCLC9-miR122 and BCLC9-AKT3 KD culture medium is supplemented with neomycin (G418 disodium salt, Sigma-Aldrich, Germany; at a final concentration of 500 μgr/mL) and puromycin (Sigma-Aldrich, Germany; at a final concentration of 10 μgr/mL) respectively, once a week to keep selective pressure.
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