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20 protocols using choline oxidase

1

Choline Oxidase Sensor Preparation

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Prior to use, the fully-assembled recording device is cleaned, sterilized (10 minutes each in 100% filtered isopropyl alcohol; then 70% filtered isopropyl alcohol; and finally sterile, de-ionized water), and allowed to air dry. Once dry, three coats (approximately 0.35μL each) of choline oxidase (Sigma, cat# C4405) solution are applied to one of the electrochemistry contacts (choline oxidase solution: 0.2 units/μL choline oxidase, 0.9% bovine serum albumin, 0.11% glutaraldehyde in water). To the other electrochemistry contact, the same volume of 0.9% bovine serum albumin, 0.11% glutaraldehyde in water is applied (i.e. the carrier solution, but not the enzyme). These coatings are allowed to cure for 24–48 hours prior to use.
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2

Fluorometric Assay for ATX lysoPLD Activity

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The
biochemical studies of ATX lysoPLD activity were performed with ATX.
Activity was measured by a coupled reaction with 1 U mL–1 choline oxidase and 2 U mL–1 horseradish peroxidase
(HRP) and 2 mM homovanillic acid (HVA) (all from Sigma-Aldrich). For
the assays, 14:0, 16:0, 18:1, and 20:0 LPC (Avanti Polar Lipids Inc.)
were incubated with 20 nM ATX, reaching a final volume of 100 μL
of the buffer, which contained 50 mM Tris, 0.01%, 50 mM CaCl2, Triton X-100, pH 7.4. Steady-state choline release was measured
at 37 °C by HVA fluorescence at λexem = 320/460 nm in Corning 96- or 384-well OptiPlate (Sigma-Aldrich)
and with a Pherastar plate reader (BMG Labtech). To determine the
IC50 for the different inhibitors on ATX activity, the
velocity of the reaction was monitored for each compound as a function
of time and the linear phase of the kinetics was taken from 60 min
after the addition of ATX to the reaction buffer. The resulting fluorescence
intensity signal over time was used to model all inhibitor concentrations
simultaneously using the following formula, where vmax and vmin were fitted for
the minimum and maximum relative velocities, respectively, and ci corresponds to the inhibitor
concentration for each assay20 (link)
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3

Acetylcholine and Choline Quantification Protocol

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Reagents. Acetylcholine chloride, choline chloride, acetylcholinesterase, choline oxidase , diisopropyl phosphorofluoridate, and sesame oil were all purchased from Sigma Chemical Co., Ltd. (St. Louis, MO); potassium phosphate monobasic was purchased from Fisher Scientific Co. (Fair Lawn, NJ); tetramethylammonium chloride, sodium azide, tris(hydroxymethyl) aminomethane (Tris), and ethylenediaminetetraacetic acid, disodium salt, dihydrate (EDTA) were purchased from Aldrich Chemical Co. Inc. (Milwaukee, WI). Bromoethane and 3-dimethylaminol-propanol (Aldrich), were employed to synthesize the internal standard, ethylhomocholine bromide (N,N-dimethyl-N-ethyl-3-amino-1-propanol bromide), Octyl sodium sulphate was purchased from Eastman Kodak Co. (Rochester, NY). All other chemicals used were of analytical grade and of the highest available purity and used without purification.
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4

Quantitative Assay of nSMase2 Activity

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The nSMase2 enzymatic activity assay has been described by our group previously[19 (link), 26 (link)]. Briefly, lysates of striatal brain tissue derived from the 4 different experimental mice groups were used as the enzyme source to catalyze the hydrolysis of exogenous sphingomyelin (20μM; Thermo Fisher, Waltham, MA) to ceramide and phosphorylcholine. Phosphorylcholine undergoes dephosphorylation by alkaline phosphatase (4 U/ml; Sigma-Aldrich) to produce choline which in turn is oxidized by choline oxidase (0.1 U/ml; Sigma-Aldrich) to betaine and hydrogen peroxide. Hydrogen peroxide reacts with Amplex Red (50 μM, Thermo Fisher) in the presence of peroxidase (HRP, 1 U/ml; Worthington Biochemical Corporation, Lakewood, NJ) to generate the fluorescent molecule resorufin. Generation of fluorescence was monitored by measuring relative florescence units with excitation at 530 nm and emission at 590 nm. Reactions were carried out for 1 hr at 37°C in 100-mM Tris–HCl pH 7.4, 10-mM MgCl2, and 0.1% Triton X-100 (Sigma-Aldrich).
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5

Synthesis and Characterization of Nanoparticles

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Chemicals that were used
in the study were purchased from different sources: CuCl2·2H2O, glutaraldehyde (GLA, 25 wt % in water), tri-sodium
citrate 5,5-hydrate, FeCl3·6H2O, FeSO4·7H2O, d-(+)-glucose (Glu), phenol,
Na2HPO4·2H2O, and NaH2PO4·2H2O were purchased from Merck; uric
acid (UA), (+)-catechin hydrate (CAT), bilirubin (Bil), caffeic acid
(CFA), fetal bovine serum (FBS), quercetin (QR), catalase from bovine
liver, uricase (UOx) from Candida sp., glucose oxidase
(GOx) from Aspergillus niger, choline
oxidase (ChOx) from Alcaligenes sp., peroxidase from
horseradish (HRP), choline chloride (ChCl), glycine, neocuproine (Nc)
hydrochloride hydrate, and trizma base were purchased from Sigma;
(3-aminopropyl)triethoxysilane (APTS), N-acetyl-l-cysteine (NAC), tetraethyl orthosilicate (TEOS), urea, 4-aminoantipyrine
(4-AAP), ascorbic acid (AA), gallic acid monohydrate (GA), l-glutathione reduced (GSH) were from Sigma-Aldrich; and trans-ferulic acid (FA), (R)-(+)-6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic
acid (trolox) (TR), and l-cysteine (CYS) were from Aldrich.
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6

In vitro Fluorogenic Assay for ATX Inhibition

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Inhibition of human ATX was determined using the fluorogenic Amplex-Red in vitro assay, which was adapted from Ferry et al. (Ferry et al., 2008 (link)). DMSO-containing compound solutions were transferred to a 384-well assay plate (Greiner #781096, Monroe, NC, United States) and 6.6 nM in-house generated ATX enzyme in assay buffer (50 mM Tris-HCl, 120 mM NaCl, 20 mM CaCl2, 5 mM KCl, 0.01% Triton-X100, pH 8.0) was added. After a 10-min incubation at room temperature, choline oxidase (7.3 U/ml; Sigma-Aldrich #C5896-1KU, St. Louis, MO, United States) and horseradish peroxidase (14.7 U/ml; F. Hoffmann-La Roche Ltd. #11378783, 1MU/4.311 g lyophilizate, Basel, Switzerland) were added and mixed. Thereafter, 110 μM LPC 18:1 (Avanti Polar Lipids #845875SP, Alabaster, AL, United States) and 183.3 μM Amplex Red (Chemodex #A-022, St. Gallen, Switzerland) were added. Plates were sealed and incubated for 5 min. The final assay concentrations were ATX 3 nM, choline oxidase 2 U/ml, horseradish peroxidase 4 U/ml, LPC 18:1 30 μM, Amplex Red 50 μM, and DMSO 2%. Background values were measured within 15 min and activity values after 90 min of incubation (Perkin Elmer Envision; Ex 535 nm/Em 587 nm; Perkin Elmer AG, Schwerzenbach, Switzerland).
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7

Electrochemical Choline Oxidase Assay

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All chemicals from commercial sources were of analytical grade. Choline oxidase (EC 1.1.3.17) from Alcaligenes sp. and its substrate choline, potassium hydrogen phosphate, hydrogen peroxide, the nitrogen mustard simulant bis(2-chloroethyl) amine and the sulfur mustard simulants 2-chloroethyl ethyl sulfide and 2-chloroethyl phenyl sulfide were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Potassium chloride, potassium ferricyanide and iron chloride were obtained from Carlo Erba (Milan, Italy). A PalmSens3 (Houten, The Netherlands) Potentiostat was used for amperometric/voltammetric measurements.
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8

Spectrophotometric Assay for PLD Hydrolytic Activity

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PLD hydrolytic activity was typically measured by spectrophotometric assay using PC as the substrate.25 (link) The reaction mixture (total volume, 100 µL) consisted of 0.5% (w/v) soybean lecithin, 0.1% (v/v) Triton X-100, 40 mM Tris–HCl (pH 7.5), 10 mM CaCl2 and 40 µL of an enzyme sample. After incubation at 55°C for 20 min, the reaction was terminated by addition of 50 µL solution containing 50 mM EDTA and 100 mM Tris-HCl (pH 7.5), and the PLD enzyme was immediately denatured by heating at 100°C for 5 min. After cooling the reaction mixture to room temperature for 5 min, 500 µL of 50 mM Tris–HCl (pH 7.5) containing 1 mg phenol, 0.3 mg 4-aminoantipyrine, 3 U/mL of choline oxidase (Sigma, China), and 2 U/mL of horseradish peroxidase (Sigma, China) was added. After incubation at 37°C for 20 min, the absorbance of the reaction mixture was measured at 505 nm (Multiskan Ascent, ThermoFisher, USA). The calibration curve was obtained by using a standard solution of choline chloride instead of the enzyme solution. One unit (U) of hydrolytic activity of PLD was defined as the amount of enzyme that produced 1 µmol choline per min. All assays were performed in triplicate.
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9

Isolation and Characterization of Phospholipid D-Producing Strain

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The wild strain with PLD producing ability used in this study was S. hiroshimensis SK43.001, which was isolated from wetland soil in Wuxi, Jiangsu, China. The strain was identified from 16S rRNA and stored in our laboratory.
Choline oxidase and peroxidase were purchased from Sigma-Aldrich Trading Co., Ltd. (Shanghai, China). Other chemicals (analytical grade) were purchased from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China).
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10

Fluorometric Acetylcholinesterase Assay

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Acetylcholinesterase (Type VI-S, EC 3.1.1.7, from Electrophorus electricus, lyophilized powder, 217 U/mg) and choline oxidase (EC 1.1.3.17, from Alcaligenes sp., lyophilized powder, 15 U/mg), acetylcholine chloride (ACh), bovine serum albumin (BSA) and hydrogen peroxide (H2O2) were purchased from Sigma-Aldrich. Certified reference pesticide standards were all purchased from Dr. Ehrensdorfer (Augsburg, Germany). Water-soluble CdSe/ZnS core/shell quantum dots (QDs) were obtained from Ocean Nanotech (Springdale, AR, USA). Phosphate buffer solution (PBS) (pH 8.0, 10 mM) and Milli-Q ultrapure water (Millipore, ≥18 MΩ·cm) were used throughout. All chemicals were used without further purification. Individual stock solutions of the pesticides were prepared in acetonitrile and stored at 4 °C. A series of working solutions were prepared daily by an appropriate dilution by PBS (pH 8.0, 10 mM) which contains 0.5 mg/mL of BSA.
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