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Sybr green 1 master

Manufactured by Bio-Rad

SYBR Green I Master is a fluorescent dye-based qPCR master mix for real-time quantitative PCR. It contains SYBR Green I dye, hot-start DNA polymerase, dNTPs, and optimized buffer components.

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2 protocols using sybr green 1 master

1

Real-time PCR Amplification Protocol

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Real-time PCR amplification was performed using Bio-Rad SYBR Green I Master according to the manufacturer’s instructions; 500 nM primers and a variable amount of DNA standard were used in a 20 μl final reaction volume. Amplification was performed in a programmable thermal cycler (Bio-Rad 480, USA) under the following conditions: after 10 min of denaturation at 95 oC, 40 amplification cycles (95°C for 5 s; 60°C for 5 s; 72°C for 20 s) were performed with a single fluorescence reading taken at the end of each cycle. For the long amplicon, the elongation was at 72°C for 90 s. Each reaction combination was performed with three replicates, and all the runs were completed with a subsequent melt curve analysis. The PCR product was resolved on ethidium-bromide-stained 1% agarose gel to confirm the specificity of bands and absence of primer dimers.
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2

Gene Expression Analysis via qRT-PCR

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Total RNA was isolated and purified from cells or tissue samples using Trizol reagent according to the manufacturer’s instructions (Invitrogen, Carlsbad, CA). Then RNA was reverse transcribed with a SuperScript first-strand synthesis system (Invitrogen, Carlsbad, CA) following the manufacturer’s recommendations. qRT-PCR was performed with SYBR Green I Master (iQ5 thermal cycler, Bio-Rad Laboratories). The sequence-specific primers used in qRT-PCR are listed in Table 1. The ΔΔCt method was used to quantify gene expression relative to GAPDH (Tu et al., 2006 (link)). The coated implants were divided into 4 groups: miR-335-5p, negative control for miR-335-5p (NC), anti-miR-335-5p, negative control for anti-miR-335-5p (antiNC) (n=5).
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