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Pcdna3.1 flag vector

Manufactured by Thermo Fisher Scientific
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The PcDNA3.1-flag vector is a plasmid used for the expression of recombinant proteins in eukaryotic cells. It contains a CMV promoter for high-level expression, a multiple cloning site for inserting the gene of interest, and a FLAG epitope tag sequence for detection and purification of the expressed protein.

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12 protocols using pcdna3.1 flag vector

1

Cloning and Expression of TDP-43 Constructs

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The cDNAs of human TDP-43 and its fragments were digested and ligated into a pET22b-GFP plasmid by using Nde I/BamH I cloning sites to make the GFP-fusion constructs. The cDNA of TDP(311–360) was subcloned into pET32M to get a thioredoxin (Trx)-fused protein, and it was also cloned into pHGB vector to generate GB1-TDP(311–360) with an N-terminal His tag. The TDP-43 and TDP-35 cDNAs were constructed into pcDNA3.1-Myc/His and pcDNA3.1/ FLAG vectors (Invitrogen) respectively for eukaryotic expression. All mutants (Q331K, G335D, M337V and Q343R) were generated by PCR site-directed mutagenesis. All constructs were verified by DNA sequencing.
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2

Cloning and Mutagenesis of Eag1 and MKRN1

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cDNAs for rat Eag1 (Dr Olaf Pongs, Saarland University, Germany) and MKRN1 long isoform were subcloned into pcDNA3.1, pcDNA3.1-Myc, or pcDNA3.1-Flag vectors (Invitrogen). Disease-causing (G348R, G469R, and I467V) and glycosylation-deficient Eag1 mutations (N388Q and N406Q; Eag1-QQ), as well as MKRN1 short form and the catalytically inactive E3 ligase mutant MKRN1-H307E, were generated using the QuikChange site-directed mutagenesis kit (Agilent Technologies), followed by verification with DNA sequencing. The other cDNA constructs include pDsRed-Monomer-Membrane (Clontech), pDsRed-ER (Clontech Laboratories), and HA-Ubiquitin (Addgene).
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3

Investigating the Regulatory Relationship between ToPPARαb and ToElovl4a

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The ORF of T. ovatus PPARαb (ToPPARαb) (GenBank accession number: MH321826) was amplified with primers incorporating restriction sites for Nhe I and Hind III at the 5′ and 3′ ends, respectively (Supplementary Table 2). The DNA fragment was digested with the same restriction endonucleases (Nhe I and Hind III; Takara, Japan) and ligated into a correspondingly restricted pCDNA3.1-Flag vector (Invitrogen, USA). Transcription factors ToPPARαb and pGL3-basic-Elovl4a-5 of the promoter segment were chosen to determine the regulatory relationship between ToPPARαb and ToElovl4a. Detection of promoter activities were at specific time points (0 h, 3 h, 6 h, 12 h, 24 h, 48 h and 72 h). The siRNA for PPARαb (PPARαb-si) and the negative control (si-NC) were purchased from Genecreate (Wuhan, China). The PPARαb siRNA sequence is listed in Supplementary Table 2. After transfection with TOCF cells, the total protein was isolated at specific time points (0 h, 6 h, 12 h, and 24 h) as described above.
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4

Cloning and Transfection of myoD

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The cDNA of myoD from mice, pigs, chicken and xenopus tropicalis were separately cloned into pcDNA3.1-flag vector (Invitrogen, Shanghai, China). NIH3T3 cells were transfected with myoD plasmid or control vector using Lipofectamine 3000 (Invitrogen) according to the manufacturer’s instruction. NIH3T3 cells were passaged to 6-well or 12-well plates 12 h before transfection. All transfections were performed in triplicate for each experiment.
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5

Murine GnT-II Expression in HEK293T Cells

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Murine GnT-II (Mgat2) cDNA from osteoblasts were inserted into pcDNA3.1(+)/FLAG vector (Invitrogen) at BamHI and EcoRI sites. The cDNA was synthesized with a primer set: BamH1, 5′-ATA​GGA​TCC​ATG​AGG​TTC​CGC​ATC​TAC​AAA​CG-3′; EcoRI, 5′-ATA​GAA​TTC​CTG​CAG​TCT​TCT​ATA​ACT​TTT​ACA​GAG​TTC​ATG​G-3′. We transfected the vector into HEK293T cells by Lipofectoamine LTX (Invitrogen) and incubated in Opti-MEM for 24 h. The transient Mgat2-293T cells were harvested with trypsin digestion and resuspended in a TSA buffer for the FACS analysis.
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6

Constructing SRPK1 and MCL-1 Expression Vectors

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Complementary DNAs encoding human SRPK1 were amplified by polymerase chain reaction using a cDNA library prepared from the human fetal brain as the template and then inserted into the pcDNA3.1 FLAG vector (Invitrogen). The vector expressing a SRPK1-targeting small hairpin RNA was constructed as follows. The short hairpin primers were designed around the potential sequence, namely sh1-SRPK1 (5′-GTGCAGCAGAAATTAATT-3′), which corresponds to nucleotides 1171–1189 of the SRPK1 transcript (GI: 47419935), and the sequence was annealed and then ligated into the PstI site of the pSilencer1.0 U6 vector (Ambion). The MCL-1 minigene reporter was constructed by inserting a complete human MCL-1 genomic fragment containing exons 1, 2, and 3 and intra-exon introns. The genomic fragments were amplified by PCR using the genomic DNA prepared from MRC5 fibroblasts as the template and then inserted into the HindIII/SacI sites to replace the β-galactosidase gene of pCH110 (Amersham Pharmacia). Mutant pCH-MCL-1 vectors containing changed nucleotides were constructed using the QuikChange site-directed mutagenesis system (Stratagene).
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7

Molecular Cloning of FMNL2 and COMMD10

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The N-terminal (NT) domain, the FH1 and FH2 regions and the mutant of FMNL2 were amplified respectively by PCR utilising the primers (Supplementary Table S1) and inserted into pCDNA3.1-FLAG vector (Invitrogen, Foster city, CA, USA). The complete sequence in open reading frame of COMMD10 was amplified by PCR using the primers (Supplementary Table S1) and subcloned into the pEGFP-C1 vector at the KpnI-XhoI site. The C-terminal (CT) and NT domains were amplified by PCR using the primers (Supplementary Table S1) and the fragments of COMMD10 digested with BamHI and XhoI were subcloned into the pEGX-6p-1 vector at the BamHI-XhoI site. The PCR conditions were as follows: 95 °C for 3 min, followed by 30 cycles of amplification (94 °C for 30 s, 55 °C for 40 s with outer primers or 68 °C for 40 s with inner primers, and 72 °C for 2 min). The correct coding regions of all plasmids were confirmed by sequencing. Transient transfection was performed using Lipofectamine2000 as a vehicle according to the manufacturer’s instructions (Invitrogen, Beijing, China). Lentiviral construct expressing or repressing COMMD10 was purchased from GeneCopoeia (Guangzhou, China) and was used to infect CRC cell lines SW480 and HT29. The eukaryotic expression vectors of pENTER-FLAG-RELA and pENTER-FLAG-RELB were purchased from Vigene Biosciences (Shandong, China).
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8

Cloning and Mutagenesis of PABPC1 and SVV 3C

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The cDNA of human PABPC1 was amplified from HEK293T cells and cloned into pcDNA3.1(+)-FLAG vector (Invitrogen, Carlsbad, CA, USA) to yield the N terminal FLAG-tagged expression construct (FLAG–PABPC1). The FLAG–PABPC1 mutant (Q437N) was generated using a specific primer, as described previously [30 (link)]. The FLAG-tagged SVV 3Cpro construct and 3Cpro mutants (H48A, C160A, H48A-C160A) without protease activity were prepared in our laboratory [17 (link)]. All constructed plasmids were analyzed and verified by DNA sequencing.
The commercial antibodies used in this study included: anti-FLAG monoclonal antibody (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-FLAG polyclonal antibody (Sigma–Aldrich, St. Louis, MO, USA)anti-PABPC1 polyclonal antibody (Abcam, Cambridge, MA, USA), anti-puromycin monoclonal antibody (Merck & Co., Kenilworth, NJ, USA), and anti-β-actin monoclonal antibody (Santa Cruz Biotechnology). Anti-VP1 polyclonal antibody was prepared in our laboratory [17 (link)].
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9

Cloning and Transfection of Mouse TALDO1 and CD36

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Mouse TALDO1 and CD36 cDNA were amplified from the mouse cDNA library and cloned into a pcDNA3.1/Flag vector (Invitrogen). All the primers used for plasmid construction are listed in
Supplementary Table S1. The transfection of the plasmids into BMDMs was performed using Lipofectamine™ 2000 reagent (Invitrogen) according to the manufacturer’s instructions. In brief, the BMDMs were first seeded into 6-well plates. Next, the DNA sample diluted in Opti-MEM medium was added to the Lipofectamine mixture which was also diluted in Opti-MEM medium. After 10 min, the DNA–lipid complex was added to the BMDMs in a dropwise manner, followed by incubation for 6 h. After this period, the medium was replaced by a complete medium, followed by incubation for 48 h. Western blot analysis was used to examine the overexpression efficiency of this plasmid.
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10

Mutational Analysis of Human TDP-43

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The intrinsic Nde I site in the cDNA for human TDP-43 was previously mutated by nonsense mutation. The cDNAs of TDP-43 fragments and their mutants were digested and ligated into pET22b vector using Nde I/Xho I cloning sites. To prepare the GB1-fused C-terminal fragments, the cDNAs of TDP(1–77) and its mutants were subcloned into a pET22b-GB1 plasmid. For eukaryotic expression, TDP-43 and its mutants were constructed into pcDNA3.1/FLAG vector (Invitrogen) respectively. The Lys and Arg residues (K82, R83, K84, K95, K97 and R98) in the NLS sequence of TDP-43 were mutated to Ala for cytoplasmic expression. All the mutants were generated by site-directed mutagenesis and verified by DNA sequencing.
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