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7 protocols using anti errα

1

Immunoprecipitation and Far-Western Assay

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Cell extracts were prepared, immunoprecipitated and analyzed as previously described [63 (link)]. An aliquot of the total lysate (5%, v/v) was included as a control for the interaction assay. Immunoprecipitation was performed with an anti-Flag M2 Affinity Gel (Sigma-Aldrich, A2220) and anti-ERRα (Epitomics, 2131–1). Western blotting was performed by HRP-labeled anti-Myc (Sigma-Aldrich, A5598), anti-HA (Sigma-Aldrich, H9658), anti-TBK1 (Epitomics, 3296–1), anti-ERRα (Epitomics, 2131–1), anti-IRF3 (pSer386) (Epitomics, 2346), anti-IRF3 (pSer396) (Cell Signaling Technology, 4947s), anti-A20 (ABclonal, A2127), anti-IKKε (ABclonal, A0244) or anti-α-Tubulin (Sigma-Aldrich, T6074) antibodies. The antigen-antibody complexes were visualized by chemiluminescence.
In a Far-Western assay, immunoprecipitates were separated by SDS-PAGE and then blotted onto nitrocellulose membranes. The membranes were subsequently incubated with purified GST-fusion proteins for 1 h at room temperature. The GST fusion proteins binding to nitrocellulose were probed with an anti-GST antibody.
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2

In situ PLA for ERRα, IRF3, and TBK1

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Fixed and permeabilized cells were incubated overnight at 4°C with the following pairs of primary antibodies: anti-ERRα (Epitomics, 2131–1), mouse mAb to IRF3 (BioLegend, 655701) or mouse mAb to TBK1 (Santa Cruz, sc-398366). The cells were washed and allowed to react with a pair of proximity probes (Olink Bioscience). The remainder of the in situ PLA protocol was performed according to the manufacturer’s instructions. The cells were examined by fluorescence microscopy (UlthaView VOX, PerkinElmer), and the Duolink Image Tool (Olink Bioscience) was used for quantitative analysis.
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3

Comprehensive Lung Protein Analysis

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The total protein of lung tissues and cells was collected with RIPA buffer (Servicebio, Wuhan, China) with cocktail and phosphatase inhibitors (Thermo Fisher Scientific, Wuhan, China), followed by electrophoresed through 8–12% sodium dodecyl sulfate–polyacrylamide gel and then transferred to 0.45 μm PVDF membrane (Merck Millipore, USA). A total of 30 ug of protein was used for western blot experiments. After blocked with 5% milk, the membrane was immunoblotted with following primary antibodies(Except for labeled, all from Cell Signaling Technology, MA, USA) at 4 °C overnight: anti-ERRα (1:1000), anti-ZO-1 (1:1000; Abcam), anti-VE-cadherin (1:1000), anti-Occludin(1:1000), anti-JAM-A(1:1000; Abcam), anti-Sirt3 (1:1000), anti-Bcl-2 (1:1000), anti-Bax (1:1000), anti-Smac (1:1000), anti-Cytochrome c (1:1000), anti-caspase 3 (1:1000), anti-cleaved caspase 3 (1:500), anti-caspase 9 (1:1000), anti-cleaved caspase 9 (1:500), anti-LC3A/B(1:1000), anti-Beclin1 (1:1000), anti-p62 (1:1000), or anti-GAPDH (1:10000, Abcam, internal control). After incubated with the HRP-conjugated secondary antibodies at 25℃ for 1 h, the immunoblots were visualized using the ECL system. The gray value was analyzed using the Image J and calculate the relative protein level based on the density ratio of the target protein to GAPDH (internal control).
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4

Western Blot Analysis of ERRα and IGF2BP1

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Following lysis with radioimmunoprecipitation assay buffer (MilliporeSigma) supplemented with protease inhibitors (Roche Diagnostics), equivalent proteins (20 μg) were separated by 10% SDS-PAGE. Subsequently, proteins were transferred to a PVDF membrane (MilliporeSigma) and were then blocked with 5% skim milk in PBS-Tween 20. The membrane was incubated with the following primary antibodies (dilution, 1:1000) at 4 °C overnight: Anti- GAPDH (cat. no. ab181602; Abcam), anti-ERRα (cat. no. sc‐65718; Santa Cruz Biotechnology, Inc.) and anti-IGF2BP1 (cat. no. 22803-1-AP; ProteinTech Group, Inc.). Following washing to remove primary antibodies, the membranes were incubated with the corresponding secondary horseradish peroxidase (HRP)-conjugated IgG antibody (dilution, 1:5000) at room temperature for 90 min. Enhanced chemiluminescence (ECL; Beyotime Institute of Biotechnology) was used to visualize the protein bands with the BioImaging System (GE Healthcare). The expression levels of ERRα and IGF2BP1 were normalized to those of GAPDH.
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5

Western Blot Analysis of Myocardium Proteins

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Myocardium tissue was harvested for Western blot as described previously [23 (link)]. Cells of each group were harvested at appropriate time. Cells were washed three times with PBS and collected after ice-cold lysis buffer digestion. Protein lysates were separated on 10% SDS-PAGE gels and transferred onto nitrocellulose (NC) membrane. Membranes were blocked with 5% milk in 1 × TBS-Tween-20 buffer and incubated overnight at 4°C with primary antibodies. Then, membranes were washed in Tris-buffered saline with Tween, followed by incubation with the corresponding secondary antibodies at room temperature for 1 h. The blots were developed using an enhanced chemiluminescence kit (Millipore, Billerica, MA, USA) and visualized with UVP Bio-Imaging Systems. Blot densities were analyzed using ImageJ Software (National Institutes of Health, Bethesda, MD).
Primary antibodies are the following: anti-SIRT1, anti-IRS2, anti-P-Akt S473, anti-P-Akt T308, anti-t-Akt, anti-acetylated protein, anti-PGC-1α, anti-NRF1, anti-NRF2, anti-ERR-α, anti-TFAM, anti-GAPDH, and anti-β-actin (all from Abcam, Cambridge, MA, USA). Secondary antibodies are the following: horseradish peroxidase-conjugated goat anti-rabbit and goat anti-rat (from Zhongshan Biotechnology Co. Ltd., Beijing, China).
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6

Immunohistochemical Analysis of ERRα in Rat Kidneys

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After the intervention, the rats were anesthetized with intraperitoneal injection of 10% chloral hydrate (3 mL/kg). The kidneys were flushed with saline after the abdominal cavities were open, fixed with neutral formalin for 30–50 min, embedded in paraffin, and sectioned at 5-µm thickness. Paraffin sections were dewaxed and hydrated, and then antigen was mixed with EDTA antigen retrieval buffer (pH 9.0). Three percent hydrogen peroxide was used to block the activity of endogenous peroxidase. The sections were dehydrated, blocked in 3% bovine serum albumin (BSA) for 30 min, and then incubated with anti-ERRα (1:1000; Abcam, Cambridge, UK). Sections were flatted on a humid chamber at 4 °C overnight, and then washed three times in phosphate buffered saline (PBS, pH 7.4) for 5 min each. Secondary antibody horseradish peroxidase (HRP labeled) were added and incubated with the sections for 50 min. Freshly prepared solution of diaminobenzidine (DAB) (K5007, DAKO, Glostrup, Denmark) was added and then rinsed with tap water to terminate coloration. Sections were stained with hematoxylin for 3 min, rinsed with tap water and examined under a microscope after dehydration.
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7

Immunoblotting Analysis of Lung Proteins

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The total protein of lung tissues and cells was collected with RIPA buffer (Servicebio, Wuhan, China) with cocktail and phosphatase inhibitors (Thermo Fisher Scienti c, Wuhan, China), followed by electrophoresed through 8-12% sodium dodecyl sulfate-polyacrylamide gel and then transferred to 0.45μm PVDF membrane (Merck Millipore, USA). After blocked with 5% milk, the membrane was immunoblotted with following primary antibodies(Except for labeled, all from Cell Signaling Technology, MA, USA) at 4 °C overnight: anti-ERRα (1:1000), anti-ZO-1 (1:1000; Abcam), anti-VE-cadherin (1:1000), anti-Occludin(1:1000), anti-JAM-A(1:1000; Abcam), anti-Sirt3 (1:1000), anti-Bcl-2 (1:1000), anti-Bax (1:1000), anti-Smac (1:1000), anti-Cytochrome c (1:1000), anti-caspase 3 (1:1000), anti-cleaved caspase 3 (1:500), anti-caspase 9 (1:1000), anti-cleaved caspase 9 (1:500), anti-LC3A/B(1:1000), anti-Beclin1 (1:1000), anti-p62 (1:1000), or anti-GAPDH (1:10000, Abcam, internal control). After incubated with the HRP-conjugated secondary antibodies at 25℃ for 1h, the immunoblots were visualized using the ECL system. The gray value was analyzed using the Image J and calculate the relative protein level based on the density ratio of the target protein to GAPDH (internal control).
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