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22 protocols using zetaview instrument

1

Isolation and Characterization of P-MSC-Derived EVs

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EVs were harvested according to previously described methods [34 ]. Briefly, the cell culture medium was collected and centrifuged at 2000 x g for 10 min to remove cellular debris. The supernatants were then collected and centrifuged at 10,000 x g for 30 min, and the new supernatants were collected and ultracentrifuged at 100,000 x g for 75 min. Next the deposit was obtained and resuspended with 1 ml phosphate-buffered saline (PBS) and the resuspension was ultracentrifuged again at 100,000 x g for 75 min after filtering with a 0.22 μm filter (Steritop™ Millipore, MA, USA). The new deposit (P-MSC-EVs) was resuspended with PBS and stored at −80°C. All the centrifugation steps were conducted at 4°C.
In addition, for the identification of P-MSC-EVs, a transmission electron microscope (HITACHI HT7700, Hitachi High-Technologies, Japan) was used to capture the morphology, a Zetaview instrument (Particle Metrix, Meerbusch, Germany) was used to measure the density and size, and western blotting was used to examine the expression of CD9, tumor susceptibility gene101 (TSG101), and calnexin in the cell lysis, EVs-depleted medium and P-MSC-EVs.
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2

Exosome Isolation and Characterization

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Exosomes were isolated from cell culture supernatants with 10% exosome‐depleted FBS (VivaCell Biosciences, China) through differential centrifugation, as described (Lötvall et al., 2014). After 48 h of culture, when cells were 90% confluent, 210 ml of the supernatant was harvested and centrifuged at 300 × g for 10 min, 2000 × g for 10 min, and then 10,000 × g for 30 min. Next, the supernatant was centrifuged at 120,000 × g for 70 min (Type 45 Ti Rotor, Beckman Coulter, USA), the pellet was resuspended in 35 ml of Phosphate buffered saline (PBS), and the sample was centrifuged again at 120,000 × g for 70 min. The supernatant was carefully removed, and the sample was resuspended in 200 μl of PBS. Exosomes isolated from human serum samples were obtained from six diagnosed PCa patients. Informed consent was obtained from all patients. Patient serum exosomes were isolated as described above and resuspended in 100 μl PBS. A BCA Protein assay kit (Pierce™, Thermo Fisher Scientific, USA) was used for exosome quantification, and exosome morphology was analysed using transmission electron microscopy (TEM) (Tecnai, USA), as previously described (Shelke et al., 2014). To examine exosome size distribution and particle concentration, nanoparticle tracking analysis (NTA) was performed using a ZetaView instrument (Particle Metrix, Germany).
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3

Quantifying MSC-Exo Release Kinetics

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MSC-Exo release kinetics for hydrogel-free µSpheres (i.e., PLGA µSpheres in 1X
PBS) and hydrogel-embedded µSpheres (i.e., PLGA µSpheres in IPN hydrogels) was
characterized by Nanoparticle Tracking Analysis (NTA) with a ZetaView®
instrument (Particle Metrix Inc., Mebane, NC).65 (link),66 (link) Samples were cultured in
sterile 1X PBS, and culture medium was fully exchanged at collection timepoints
and on a weekly basis. Releasate samples were collected at 0-, 2-, 8-, and
12-hour timepoints (N = 4/group/timepoint) for the following
conditions: (1) 7.5 mg PLGA µSpheres in 1 mL sterile 1X PBS, (2) 15 mg PLGA
µSpheres in 1 mL sterile 1X PBS, (3) 2.5% (w/v) PLGA µSpheres embedded in IPN
hydrogels cultured with 3 mL sterile 1X PBS, and (4) 5% (w/v) PLGA µSpheres
embedded in IPN hydrogels cultured with 3 mL sterile 1X PBS. About 7.5 mg PLGA
µSpheres equates to the amount of µSpheres in one hydrogel-embedded technical
replicate at 2.5% (w/v) and 15 mg PLGA µSpheres equates to the amount of
µSpheres in one hydrogel-embedded technical replicate at 5% (w/v).
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4

Characterizing Cerium-Enriched Extracellular Vesicles

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High-resolution transmission electron microscopy (HR-TEM) and energy dispersive spectroscopy (EDS) analyses were performed using a JEM-2100F microscope set at an accelerating voltage of 200 kV. The particle size distribution and zeta potential were evaluated through nanoparticle tracking analysis (NTA) using the ZetaView instrument (Particle Metrix, Inning am Ammersee, Germany). The quantity of cerium that was incorporated into MSCExo-Ce was established via inductively coupled plasma mass spectrometry (ICP-MS) using an iCAP Qc system (Thermo Fisher Scientific, Waltham, MA, USA), and the cerium was subsequently normalized based on the vesicle count.
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5

Nanoparticle Characterization via ZetaView NTA

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The ZetaView Instrument from Particle Metrix was used for nanoparticle tracking analysis (NTA) for all samples. The analyser was standardized with manufacturer supplied 102 nm polystyrene beads (dilution of 1:250,000) before each run. A typical observed mean size by NTA was 108 nm and the mode size was 105 nm. Afterwards, the NTA was washed with 10 mL of nanopure water and samples were analysed. Between samples 10 mL of nanopure water was used to flush the system. Samples were diluted in water until there were approximately 100–250 particles per field of view. Videos were taken using six cycles in 11 positions to determine particle concentration and size distribution.
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6

Nanoscale Protein Cluster Analysis

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NTA measurements of protein clusters in the dilute phase in equilibrium with condensates, and at a protein concentration below csat, were performed using a ZetaView instrument equipped with a CMOS camera and a 405 nm laser (Particle Metrix). The instrument was calibrated according to the manufacturer’s protocol using polystyrene nanoparticle standards. For the analysis of cluster formation below csat, samples were prepared at 280 nM protein concentration and low ionic strength (20 mM NaCl), and injected into the sample chamber using a 1 mL syringe until the chamber was completely filled. For the analysis of the dilute phase in equilibrium with the condensates, heterogeneous solutions at 1 µM enzyme concentration were centrifuged at 8000 × g for 30 min to separate the dilute and the dense phase. Subsequently, samples were injected into the chamber using a 1 mL syringe. The chamber was washed with a buffer between two sample measurements until no particles were visible. Video acquisition was performed at 11 different positions with the shutter set to 100 and a high frame rate. The sensitivity was adjusted for each sample to a scattering intensity below 20. More than 1000 traces were analyzed per sample. Data analysis was performed using the ZetaView analysis software (ZetaView 8.04.02 SP2).
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7

Nanoparticle Tracking Analysis of Extracellular Vesicles

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The concentration and the size distribution of EVs were analyzed by nanoparticle tracking analysis (NTA) using a ZetaView instrument (Particle Metrix, Inning am Ammersee, Germany) and the NanoSight LM10 microscope (NanoSight Ltd., Amesbury, UK) configured with a 405-nm laser. Videos were collected and analyzed using the NTA software (version 2.3) with the default setting of the minimal expected particle size, minimum track length, and blur. Each EV sample was vortexed and diluted with particle-free PBS to obtain the recommended 25–100 particles/frame of the NTA system. Five videos of typically 60-s duration were recorded to generate replicate histograms that were averaged.
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8

Characterization of Exosome Isolation

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Exosomes were isolated using the Total Exosome Isolation Kit (4484450, Invitrogen, USA) according to the manufacturer's instructions. The size distribution and concentration of exosomes were measured by nanoparticle tracking analysis (NTA) using a ZetaView instrument (Particle Metrix). For transmission electron microscopy (TEM), exosomes were sedimented by ultracentrifugation (Beckman TL-100) at 200,000 × g for 20 h through a sucrose gradient and fixed in 3% (w/v) glutaraldehyde and 2% paraformaldehyde in cacodylate buffer (pH 7.3). The fixed exosomes were applied to a continuous carbon grid and negatively stained with 2% uranyl acetate. The samples were examined with a Philips CM10 electron microscope. The exosomal markers (CD63, CD9, and TSG101) were also detected by Western blot.
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9

Measuring EV Particle Size and Concentration

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We measured the particle sizes and concentration of EVs by nanoparticle tracking analysis (NTA) with a zeta view instrument (Particle Metrix) and the corresponding software.
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10

Characterization of DNA/Protein Particles

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The DNA/protein particles were formed in 2 mL test tubes by adding PBS buffer with the proteins of interest, followed by pEGFP DNA (100 ng) in a 10 µL volume. After 30 min of incubation at room temperature, the sample was diluted 1:200 (v/v) to a final concentration of 107 particles mL–1 with PBS. Size profile and zeta potential measurements were performed at 11 positions with a sensitivity of 85, shutter of 100, and frame rate of 30 on a ZetaView instrument equipped with a CMOS camera and a 405 nm laser (Particle Metrix GmbH, Meerbusch, Germany). Size profile data was smoothed over 4 neighbors with a second order smoothing polynomial function using GraphPad Prism software (version 8.0, GraphPad Software Inc., San Diego, CA).
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