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4 protocols using lc3b rabbit polyclonal

1

Colocalization of TFEB, LAMP1, and LC3B

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T80 and HEY cells were seeded onto glass coverslips (250,000 cells per well), allowed to adhere overnight, treated with 250μM FAC, and processed according to previously published methodology [6 (link)]. For colocalization studies, cells were fixed in 4% formaldehyde (in PBS), followed by blocking in 5% goat serum and 0.1% Triton-X-100 (in PBS) for 1h at room temperature. The cells were then stained with anti-TFEB mouse monoclonal (#H00007942, 20μg/mL, Abnova (Taipei City, Taiwan)) antibody overnight in a humidified chamber at 4°C followed by a 1h incubation with AlexaFluor-488 anti-mouse antibody (#A12379, 1:500, Fisher Scientific (Pittsburgh, PA, USA)). Next, the fixed cells were incubated with either anti-LAMP1 (#9091, 1:200, Cell Signaling Technology (Danvers, MA, USA)) or LC3B rabbit polyclonal (#2775, 1:2000, Cell Signaling Technology (Danvers, MA, USA)) antibody overnight in a humidified chamber at 4°C followed by 1h incubation with AlexaFluor-546 anti-rabbit secondary (#A11035, 1:500, Fisher Scientific (Pittsburgh, PA, USA)). Slides were viewed and imaged at 63X magnification using a PerkinElmer UltraVIEW Confocal Spinning Disc Microscope (PerkinElmer Incorporation). Three independent experiments were performed. Representative images were captured and colocalization was quantified via Pearson Correlation Coefficient using the Velocity Software (Version 6.1.1).
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2

Western Blot Analysis of Apoptosis Regulators

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Cells were incubated in lysis buffer (1 % Triton X-100, 50 mM HEPES, 150 mM NaCl, 1 mM MgCl2, 1 mM EGTA, 10 % glycerol, and protease inhibitor cocktail) for 1 h at 4 °C. Cell lysates were harvested by scraping and centrifuged at 14,000 rpm for 10 min at 4 °C. Normalized samples (using the BCA assay (Fisher Scientific, Pittsburgh, PA)) were run on SDS-PAGE gels and transferred to polyvinylidene fluoride (PVDF) membranes for western blotting. Bound antibody was detected using enhanced chemiluminescence reagent followed by exposure to film. Primary antibodies were used at the following dilutions and obtained from the following sources: Ago2 rabbit monoclonal (#2897, 1:500), caspase 2 mouse monoclonal (1:1000), caspase 3 rabbit monoclonal (1:1000), caspase 8 mouse monoclonal (1:1000), and caspase 9 mouse monoclonal (1:1000) (Initiator caspases sampler kit #12675), Drp1 rabbit monoclonal (#8570, 1:1000), GAPDH rabbit monoclonal (#2118, 1:5000), LC3B rabbit polyclonal (#2775, 1:1000), pan-actin rabbit polyclonal (#4968, 1:1000), PARP rabbit polyclonal (#9542, 1:1000), and PINK1 rabbit monoclonal (#6946, 1:500) antibodies were obtained from Cell Signaling Technology (Danvers, MA). ATG7 rabbit polyclonal antibody (PM039, 1:1000) was obtained from MBL International Corporation (Woburn, MA).
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3

Isolation and Immunoblotting of Cellular Proteins

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Protein isolation and Western blot analyses were performed according to previously published methods [7 (link)]. Primary antibodies were obtained from the following sources and used at the following dilutions: LC3B rabbit polyclonal (#2775S, 1:1000), p-ERK1/2 rabbit polyclonal (#9101S, 1:1000), total MAPK rabbit polyclonal (#4695S, 1:1000), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) rabbit polyclonal (#2118S, 1:4000), and FTH1 rabbit polyclonal (#3998S, 1:1000) were obtained from Cell Signaling Technology. CD71 mouse monoclonal (2B6, sc-51829, 1:100), TOM20 rabbit polyclonal (FL-145, sc-11415, 1:7500), TOM70 mouse monoclonal (A-8, sc-390545, 1:1000), IRP1 goat polyclonal (N-17, sc-14216, 1:1000) and IRP2 mouse monoclonal (7H6, sc-33682, 1:500) were obtained from Santa Cruz Biotechnology.
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4

Western Blotting Analysis of Key Markers

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SDS-PAGE and western analyses were completed as previously described89 (link),90 (link). Briefly, normalized protein samples were loaded onto either 8% or 10% SDS-PAGE gels (as appropriate) and western blotting was completed with the following antibodies from Cell Signaling Technology (Danvers, MA, USA): (1) EVI1 rabbit monoclonal (#2593, 1:500), (2) Myc rabbit monoclonal (#13987, 1:500), (3) total Ras rabbit monoclonal (#3339, 1:1000), (4) β-catenin rabbit polyclonal (#9587, 1:1000), (5) BMI1 rabbit monoclonal (#6964, 1:1000), (6) LC3B rabbit polyclonal (#2775, 1:1000), and (7) Pan-Actin rabbit polyclonal (#4968, 1:500). SV40 LTAg mouse monoclonal (#554149, 1:1000) and p62 mouse monoclonal (#610832, 1:1000) antibodies were obtained from BD Biosciences (San Jose, CA, USA). FANCD2 mouse monoclonal (#sc-20022, 1:1000), Cyclin D1 rabbit polyclonal (#sc-718, 1:1000), and FoxJ1 mouse monoclonal (#sc-365216, 1:500) were obtained from Santa Cruz Biotechnology.
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