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4 protocols using ceranib 2

1

Crystallographic Analysis of Acid Ceramidase

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Crystals were grown by sitting or hanging drop vapor diffusion at 22 °C. Inactive nmr aCDase crystallized in 100 mM MES pH 6.0, 10% glycerol, 5% PEG 1000 and 30 % PEG 600. Inactive cmw aCDase crystals were obtained in 100 mM citric acid pH 3.5 and 3 M NaCl. Autocleaved human-aCDase was incubated with 1 mM ceranib-2 (Sigma) and 1 mM Triton X-100, and crystallized in 100 mM sodium phosphate-citrate pH 4.3, 200 mM Li2SO4, and 20% PEG 1000. Crystals were soaked in well-solution supplemented with 20% glycerol and heavy atom compounds: 500 mM NaI for nmr protein crystals (20 s) or 500 mM lithium 5-amino-2,4,6-triiodoisophthalate for the cmw homolog (20 s). X-ray diffraction data were collected at 100 K on beamline 08ID-1 with a Rayonix MX300 CCD detector or on beamline 08B1-1 with a Rayonix MX300HE CCD detector at the Canadian Macromolecular Crystallography Facility, Canadian Light Source. Data were processed by HKL200060 (link).
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2

Biochemical Analysis of Insulin Signaling

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All reagent-grade chemicals including insulin, TOFA, FB1, myriocin, ceranib-2, A939572, oleate, and stearate were obtained from Sigma-Aldrich. C2-cer was obtained from Merck Chemicals. C-75 was from Tocris Bioscience. Antibodies against 473Ser-Akt, 308Thr-Akt, native PKB/Akt, GLUT4, and α1 NA-K-ATPase were from Cell Signaling Technology, and antibody against ceramide (MID 15B4 clone) was from Enzo Life Sciences. Horseradish peroxidase anti-rabbit and horseradish peroxidase anti-mouse were from Jackson ImmunoResearch Laboratories, and the enhancer chemiluminescent Supersignal was from Thermo Fisher Scientific. Ceramide secondary antibody (Alexa fluor 488 goat anti-mouse) was from Thermo Fisher Scientific. Glucose uptake fluorometric assay kit was from Sigma-Aldrich.
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3

Lipid Synthesis and Trafficking Assay

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All chemical reagents were of analytical grade or higher. Lipid standards where from Avanti Polar Lipids (Alabaster, USA) or Matreya LLC (Pleasant Gap, USA). Cholesteryl phosphocholine (CholPC) was synthesized as described by Lönnfors et al. [38 (link)], or obtained from Avanti Polar Lipids. D-erythro-sphingosine and hexanoic acid were purchased from Larodan (Malmö, Sweden). [3-3H]D-erythro-sphingosine (15–30 Ci/mmol) and [9–10,3H]hexadecanoic acid (30–60 Ci/mmol) were obtained from PerkinElmer (Waltham, MA, USA). Decanoic and hexadecanoic acids were obtained from Sigma-Aldrich (St. Louis, MO, USA). Organic solvents were from Rathburn Chemicals Ltd (Walkerburn Scotland). HeLa cells (ATCC CCL-2, LGC Standards) were cultured in Dulbecco’s Modified Eagle’s medium (DMEM, Sigma-Aldrich) supplemented with penicillin (50 U/ml), streptomycin (50 U/ml), 4 mM L-glutamine and 10% fetal calf serum (FCS, all from Sigma-Aldrich) prior to the experiments. Chloroquine and ceranib-2 were purchased from Sigma-Aldrich and fumonisin B1 was purchased from Enzo Life Sciences (Farmingdale, NY, USA).
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4

Planar Patch-Clamp Recordings of Murine Podocytes

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Whole-cell planar patch-clamp recordings were performed using cultured murine podocytes. The planar patch-clamp technology combined with a pressure control system (Port-a-Patch, Nanion Technologies) was applied as previously described [35 (link)]. Ion currents were recorded, filtered, and analyzed using an Axopatch 200B amplifier, an Axon Digidata 1550B low-noise data acquisition system and the pClamp10 software (Axon instruments). Seal resistance was higher than 1 GΩ. Internal solution contained 50 mM CsCl, 10 mM NaCl, 60 mM CsF, 20 mM EGTA, and 10 mM HEPES/CsOH. External solution contained 140 mM NaCl, 4 mM KCl, 1 mM MgCl2, 2 mM CaCl2, 5 mM D-glucose monohydrate, and 10 mM HEPES/NaOH. Seal enhancing solution contained 80 mM NaCl, 3 mM KCl, 10 mM MgCl2, 35 mM CaCl2, and 10 mM HEPES/HCl. Podocytes were stimulated by administration of compounds into the internal and external solutions. Carbenoxolone, probenecid, carmofur, ceranib-1, and ceranib-2 were purchased from Sigma-Aldrich. D-erythro-MAPP, C-16 ceramide (dissolved in dimethylformamide to 0.5 mg/mL and diluted to 40 μM with internal solution before addition), sphingosine, and sphingosine-1-phosphate (dissolved in methanol to 1 mg/mL and diluted to 40 μM with internal solution before addition) were purchased from Cayman. Recombinant mouse adiponectin protein was purchased from Abcam.
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