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10 protocols using anti dr4

1

Evaluating Apoptosis-related Proteins in Cancer Cells

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Western blotting was performed on various cancer cell lines to investigate the alteration of protein expression as described previously [35 (link),36 (link)]. The harvested cells were lysed using RIPA lysis buffer and separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis. The protein was transferred onto nitrocellulose membrane (GE Healthcare Life Science, Pittsburgh, PO, USA) and were incubated with primary antibodies overnight, and then the secondary antibody was incubated at room temperature for 2 h. Finally, expression of proteins was detected by an enhanced chemiluminescence kit (Merck Millipore, Darmstadt, Germany). The information on primary antibodies was provided as below: anti-Bcl-2 and anti-DR4 from Abcam (Waltham, MA, USA); anti-Mcl-1 and anti-cIAP2 from Santa Cruz Biotechnology (Santa Cruz, CA, USA); anti-Bax, anti-Bim, and anti-XIAP from Biosciences (San Jose, CA, USA); anti-survivin from R&D System; anti-Bcl-xL, anti-cIAP1, anti-DR5, anti-PARP, anti-USP2, and anti-cleaved caspase-3 from Cell Signaling Technology (Beverly, MA, USA); anti-c-FLIP and anti-caspase3 from Enzo Life Sciences (San Diego, CA, USA). RT-PCR and quantitative PCR were used to analyze mRNA expression, and primer sequences were described previously [37 (link)].
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2

Investigating Cancer Cell Signaling Pathways

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Human renal carcinoma (Caki-1 and A498), human lung cancer (A549), and human breast cancer (MDA-MB361) were procured from American Type Culture Collection (Manassas, VA, USA). Human recombinant TRAIL, zVAD-fmk, and anti-survivin were provided by the R&D system (Minneapolis, MN, USA). MG132, PD98059, AG-490, compound C, and NVP-BEZ235 were supplied from Calbiochem (San Diego, CA, USA). Dexamethasone, cycloheximide, AR-A014418, PP242, BAY11-7082, rapamycin, and anti-actin were provided from Sigma Chemical Co. (St. Louis, MO, USA). Anti-PARP, anti-Bcl-xL, anti-DR5, anti-cIAP1, anti-caspase-8, anti-phospho-GSK3β, and anti-GSK3β were provided by Cell Signaling Technology (Beverly, MA, USA). Anti-Bim, anti-Bax, and anti-XIAP were obtained from BD Biosciences (San Jose, CA, USA). Anti-Mcl-1, anti-Bcl-2, anti-cIAP2, and anti-Cbl were purchased from Santa Cruz Biotechnology (St. Louis, MO, USA). SB203580, SP600125, and anti-c-FLIP(L) were obtained from Enzo Life Sciences (San Diego, CA, USA). Anti-DR4 were obtained from Abcam (Cambridge, MA, USA). pCMV-Myc-Cbl plasmid was a gift from Dr. S. J. Kim (CHA University, Korea). GSK3betaS9A (1016) was a gift from Scott Friedman (Addgene plasmid # 49492; http://n2t.net/addgene:49492; RRID: Addgene_49492) [36 (link)].
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3

TRAIL-induced Apoptosis in Kidney Cells

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Mouse kidney cells (TCMK-1) were a gift from Dr. T.J. Lee (Yeungnam University, Korea). Primary culture of human mesangial cells (Cryo NHMC) were purchased from Clonetics (San Diego, CA, USA), and other cell lines are from the ATCC (Manassas, VA, USA). All cells were maintained in Dulbecco’s modified Eagle’s medium, and supplemented with 10% FBS, 5% antibiotic solution, and 100 μg/mL gentamycin. Garcinol and lactacystin was purchased from Enzo Life Sciences (Ann Arbor, MI, USA). Recombinant human TRAIL and z-VAD-fmk were purchased from R&D (Minneapolis, MN, USA). Calbiochem supplied N-acetyl-l-cysteine (NAC), trolox, and MG132 (San Diego, CA, USA). The following antibodies were used: anti-XIAP, -Bcl-2, -Mcl-1, -survivin, -Cbl, and -Itch (Santa Cruz Biotechnology, Santa Cruz, CA, USA); anti-c-FLIP (ALEXIS Corporation, San Diego, CA, USA); anti-PARP, -DR5, -PSMA5, -PSMD4/S5a, -cleaved caspase-3 (Cell Signaling Technology, Beverly, MA, USA); anti-caspase-3 (Enzo Life Sciences, Ann Arbor, MI, USA); anti-DR4 (Abcam, Cambridge, MA, USA); anti-actin (Sigma-Aldrich, St. Louis, MO, USA). Santa Cruz Biotechnology (Santa Cruz, CA, USA) and Bioneer (Daejeon, Korea) supplied DR5 siRNA and GFP siRNA (control siRNA), respectively. Sigma Chemical Co. supplied other reagents (St. Louis, MO, USA).
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4

Molecular Mechanisms of TRAIL-Induced Apoptosis in Cancer Cells

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Selleckchem supplied R428 and cisplatin (Houston, TX, USA), and R&D system supplied recombinant human recombinant TRAIL and z-VAD-fmk (Minneapolis, MN, USA). Sigma Chemical Co. provided MG132, cycloheximide, carboplatin, oxaliplatin, doxorubicin, and 5-FU (St. Louis, MO, USA). The primary antibodies were as follows: Anti-phospho-Axl (Y702) (Cell Signaling Technology, Beverly, MA, USA), anti-pro-caspase-3 (Cell Signaling Technology), anti-cleaved caspase-3 (Cell Signaling Technology), anti-PARP (Cell Signaling Technology), anti-Bcl-xL (Cell Signaling Technology), anti-DR5 (Cell Signaling Technology), anti-actin (Sigma Chemical Co.), anti-Axl (Santa Cruz Biotechnology, St. Louis, MO, USA), anti-Mcl-1 (Santa Cruz Biotechnology), anti-Bcl-2 (Santa Cruz Biotechnology), anti-cIAP2 (Santa Cruz Biotechnology), anti-Bim (BD Biosciences, San Jose, CA, USA), anti-XIAP (BD Biosciences), anti-survivin (R&D system, Minneapolis, MN, USA), anti-DR4 (Abcam, Cambridge, MA, USA), and anti-c-FLIP (Enzo Life Sciences, San Diego, CA, USA). The siRNAs were as follows: GFP (control) siRNA (Bioneer, Daejeon, Korea), Axl siRNA (Santa Cruz Biotechnology), and DR5 siRNA (Invitrogen).
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5

Hispolon sensitizes TRAIL-induced apoptosis

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American Type Culture Collection (Manassas, VA, USA) supplied the all cells and the transformed mouse kidney cells (TCMK-1) was a gift from Dr. TJ Lee (Yeungnam University, Korea). The cells were cultured using Dulbecco’s modified Eagle’s medium containing 10% FBS, 20 mM HEPES buffer and 100 μg/mL gentamycin. Hispolon was purchased from ENZO life Science (Farmingdale, NY, USA). The recombinant human TRAIL was purchased from KOMA Biotech (Seoul, Korea). Anti-DR5 (1:700, #8074), Bcl-xL (1:700, #2764), and anti-PARP (1:700, #9542) antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA). Anti-DR4 (1:1,000, ab8414), and anti-cIAP1 (1:700, ab154525), antibodies were purchased from Abcam (Cambridge, UK). Anti-c-FLIP (1:700, ALX-804-961-0100) antibody was obtained from Enzo Life Sciences. Anti-Mcl-1 (1:700, sc-819) and anti-cIAP2 (1:700, sc7944) antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-XIAP (1:1,000, 610762) antibody and anti-Bim (1:700, AB17003) antibodies were purchased from BD Biosciences (San Jose, CA, USA). Cyclohexamide and other reagents were purchased from Sigma Chemical Co. (St. Louis, MO, USA).
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6

Immunofluorescence Imaging of DR4 and TNFR1

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Control or HPV16 E6E7 expressing keratinocytes were seeded in 8-wells Lab-Tek chambers (Thermo-Scientific, Waltham, MA, USA) at 2 × 104 cells/well. Cells were fixed with a buffered 4% formaldehyde solution for 15 min and permeabilized in methanol for 2 min. Cells were incubated with anti-DR4 or anti-TNFR1 (Abcam, Cambridge, MA, USA) ON at 4 °C. After washing, cells were incubated with FITC-conjugated anti-mouse (BD Biosciences, San Jose, CA, USA), washed, and mounted with Vectashield mounting medium for fluorescence with DAPI (Vector Laboratories, Burlingame, CA, USA). Images were obtained with an Olympus BX61 microscope, with an attached DP70 Olympus camera and its own software (Olympus, Tokyo, Japan).
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7

Apoptosis Signaling Pathway Analysis

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Anti-caspase-8 (Cell Signaling Technology, Danvers, MA, #9746), anti-cleaved PARP-1 (Cell Signaling Technology, #5625), anti-cleaved caspase-3 (Cell Signaling Technology, #9664), anti-cleaved caspase-9 (Cell Signaling Technology, #7237), anti-CD44 (Cell Signaling Technology, #5640), anti-p-JNK (Cell Signaling Technology, #4668), anti-p-p53 (Ser15 Cell Signaling Technology, #9284), anti-BCl-2 (Cell Signaling Technology, #2870), anti-p-BCL-2 (Cell Signaling Technology, #2875), anti-BCL-XL (Cell Signaling Technology, #2764), anti-DR4 (Abcam, Cambridge, MA, #13890), anti-DR5 (Abcam, #47179), anti-c-Jun (Santa Cruz Biotechnology, Santa Cruz, CA, sc-1694), or anti-β-actin (sc-47778) were used in Western blot analysis. In general, cells were lyzed and sonicated briefly in ice-cold PBS buffer (1 mM PMSF, and 1 μg/ml each of aprotinin, leupeptin, and pepstatin A). Cell lysates were clarified by centrifugation, resolved by SDS-PAGE, and proteins on gels were transferred to nitrocellulose (Bio-Rad, Hercules, CA) using a semidry blotter (Bio-Rad). The membrane was blocked with 3% BSA in TBST (10 mM Tris-Cl, pH 8.0, 150 mM NaCl, 0.05% Tween-20) and incubated overnight at 4°C with primary antibodies. Immunoblots were visualized by an enhanced chemiluminescence method and analyzed by Multigauge software (Fujifilm, Tokyo, Japan).
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8

Dissecting TRAIL-induced Apoptosis Signaling

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Sigma Chemical Co. provided honokiol, cycloheximide and MG132 (St. Louis, MO, USA), and R&D system supplied recombinant human recombinant TRAIL and z-VAD-fmk (Minneapolis, MN, USA). Enzo Life Sciences provided lactacystin (Ann Arbor, MI, USA). The primary antibodies were as follows: Cell Signaling Technology supplied anti-PARP, anti-cleaved caspase-3, anti-Bcl-xL, anti-DR5, anti-CHOP, and anti-UCHL1 (Beverly, MA, USA). Sigma Chemical Co. supplied anti-actin (St. Louis, MO, USA). Enzo Life Sciences provided anti-pro-caspase-3 and anti-c-FLIP (San Diego, CA, USA). BD Biosciences provided anti-Bim and anti-XIAP (San Jose, CA, USA). Abcam supplied anti-DR4 (Cambridge, MA, USA). R&D system supplied anti-survivin (Minneapolis, MN, USA). Santa Cruz Biotechnology provided anti-Mcl-1, anti-Bcl-2, anti-cIAP2, anti-ATF4, anti-Ub, anti-Cbl, anti-Itch, anti-USP14, anti-USP33, anti-OTUB1, anti-TRABID, and anti-STAMBPL1 (St. Louis, MO, USA). Bethyl Laboratories Inc provided anti-USP7 and anti-USP8 (Montgomery, TX, USA). Novus Biologicals supplied anti-USP53 (Centennial, CO, USA). Abnova provided anti-USP9X (Taipei City, Taiwan). The siRNAs were as follows: GFP (control) siRNA (Bioneer, Daejeon, Korea), DR5 siRNA (Invitrogen, Carlsbad, CA, USA), and STAMBPL1 siRNA (Santa Cruz Biotechnology, St. Louis, MO, USA). STAMBPL1 plasmid was a gift from Dr. H.C. Kang (Ajou University, Suwon, Korea).
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9

Targeting STAT3 Signaling with Decoy ODN

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Cy3 labeled STAT3 decoy ODN (sense, 5'-CATTTCCCGTAAATC-3'; antisense, 3'-GTAAAGGGCATTTAG-5') and the mutant control decoy (sense, 5'-CATCTTGCCAATATC-3'; antisense, 3'-GTAGAACGGTTATAG-5') were synthesized by GenePharma Co., Ltd. (Shanghai, China), all of which were capped with phosphorothioate at both ends. Human TRAIL recombinant protein (TRAIL) was obtained from PeproTech (Rocky Hill, NJ). Primary antibodies used for western-blot analysis and immunostaining including anti-STAT3 Stat3 phosphorylated on Y705, anti-LDL receptor, anti-Bcl-2, anti-Bcl-xL, anti-Mcl-1, anti-survivin, anti-DR4, anti-DR5, anti-β-actin, Alexa Fluor 488-conjugated goat anti-rabbit IgG, phycoerythrin (PE) conjugated goat anti-rabbit IgG and horseradish peroxidase-conjugated goat anti-rabbit IgG were purchased from Abcam (Cambridge, MA). 1,2-dioleoyl-sn-glycero-3-phosphate (DOPA) and 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) were purchased from Avanti Polar Lipids, Inc. (Alabaster, AL). Other chemicals were obtained from Sigma-Aldrich (St. Louis, MO).
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10

TRAIL-mediated Apoptosis Signaling Protocol

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DAC was purchased from Selleck (Houston, USA). Soluble recombinant human TRAIL was purchased from PeproTech (London, UK). DR4 and non-targeting scramble small inhibitory ribonucleic acids (siRNAs) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Allophycocyanin (APC)-conjugated anti-DR4 and anti-DR5 antibody, and the isotype control, which were used for the flow cytometry, were purchased from BioLegend (San Diego, CA). The following antibodies were used for western blot: anti-DR4 (Abcam Cat# ab8414, RRID:AB_306549), anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Abcam Cat# ab128915, RRID:AB_11143050), and anti-DR5 (Sigma-Aldrich Cat# HPA023625). The other antibodies used included caspase-7 (Cell Signaling Technology Cat# 9492, RRID:AB_2228313), cleaved-caspase-7 (Cell Signaling Technology Cat# 8438, RRID:AB_11178377), caspase-8 (Cell Signaling Technology Cat# 9746, RRID:AB_2275120), caspase-9 (Cell Signaling Technology Cat# 9502, RRID:AB_2068621), cleaved-caspase-9 (Cell Signaling Technology Cat# 7237, RRID:AB_10895832), PARP (Cell Signaling Technology Cat# 9542, RRID:AB_2160739), and cleaved-PARP (Cell Signaling Technology Cat# 5625, RRID:AB_10699459).
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