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9 protocols using lc ms grade methanol and water

1

Characterization of Ion Pairing Agents

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The ion pairing agents N,N-dimethylbutylamine (DMBA), octylamine (OA), tripropylamine (TPA), N,N-dimethylhexylamine (DMHA), diisopropylamine (DIPA), N-methyldibutylamine (MDBA), propylamine (PA), triethylamine (TEA), hexylamine (HA), tributylamine (TBA), N,N-dimethylcyclohexylamine (DMCHA), N,N-diisopropylethylamine (DIEA), tetramethylethylenediamine (TMEDA), dibutylamine (DBA) and 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU), as well as LC-MS grade methanol and water were purchased from Sigma-Aldrich Inc. (St. Louis, MO). DNA Lobind microcentrifuge tubes were purchased from Eppendorf (Hauppauge, NY). The ssDNA strands with the following sequences were purchased from Eurogentec (Seraing, Belgium): AAAAAAAAAAAAAAAAAAAAAAAA, TTTTTTTTTTTTTTTTTTTTTTTT, CCCCCCCCCCCCCCCCCCCCCCCC, GTGTGTGTGTGTGTGTGTGTGTGT, ATTTCTTTGTTTATTTCTTTGTTT, ATTCTTGTTATTCTTGTTATTCTT, ATCTGTATCTGTATCTGTATCTGT, TCGTACTAGTGGTCCTAATCGTAC, ATCGATCGATCGATCGATCGATCG, ACGACGACGTTTACGACGACGACG and CGGAGGAAACCTACGACGAGGAAA. The 24-mer TCGTGCTTTTGTTGTTTTCGCGTT was purchased from Integrated DNA Technologies (Coralville, IA).
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2

Quantitative Analysis of Organic Acids

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Citric acid, Formic acid, acetic acid, EDTA, LC-MS grade methanol and water, and HPLC grade acetone were obtained from Sigma Chemical Co. (St. Louis, MO, USA).
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3

Quantifying Oxidative Stress Biomarkers

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o,o’-dityrosine (diY) (>99%) was purchased from Toronto Research Chemicals (Toronto, Ontario, Canada). 8-hydroxy-2’-deoxyguanosine (8-OHdG) (≥98%), malondialdehyde tetrabutyl-ammonium salt, acetic acid, n-hexane, LC-MS grade methanol and water, acetonitrile, ethyl acetate, and synthetic urine were purchased from Sigma Aldrich (St. Louis, MO, USA). 8iso-prostaglandin F (8-PGF) (>99%), 15(R)-prostaglandin F (15-PGF) (>98%), 8-iso15(R)-prostaglandin F (8,15-PGF) (>98%), 11β-prostaglandin F (11-PGF) (>98%), and the internal standards (IS) for F2-isoprostanes, D4-8-iso-prostaglandin F (D4-8-PGF) (>99%), were purchased from Cayman Chemicals (Ann Arbor, MI, USA). 2,4–1,1,3,3-, tetraethoxypropane-1,3-d2 (>98%) (IS for MDA) was purchased from C/D/N isotopes (PointClair, Quebec, Canada). 13C12-o,o’-dityrosine (IS for diY) and 15N5-8-OHdG (IS for 8-OHdG) were purchased from Cambridge Isotope Laboratories (Andover, MA, USA). Derivatization reagent 2,4-dinitrophenylhydrazine (DNPH) was purchased from Spectrum (New Brunswick, NJ, USA).
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4

Scotch Whisky Composition Analysis

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Scotch Whisky samples were provided by the Scotch Whisky Research Institute (SWRI). A total of 85 authentic Scotch Whisky samples were analyzed, consisting of a mixture of malts and blends. The main sample set was the SWRI standard sample set from 2014 (nmalts = 24, nblends = 28). Further samples were sourced from subsets of previous years’ standard sample sets (i.e., 2010 (nmalts = 23, nblends = 1) and 2012 (nmalts = 8, nblends = 1). The sample sets were curated by the SWRI to represent the majority of Scotch Whisky sold as UK or export case sales; 2014 (73.15% of total sales), 2012 (71.2% of total sales), and 2010 (67.4% of total sales) [51 , 54 , 55 ]. In this work, malts refer to both single malt and blended malts, whilst blends refer to blended whisky. There are no single or blended grain whiskies in the sample set, as these represent a very small percentage of products on the market. A malt new-make spirit sample was also analyzed. Samples are referred to by an anonymized reference label of the format SYY-XXXX, where YY refers to the sample set year and XXXX is a unique identifier for the sample in that year. LC-MS grade methanol and water were purchased from Sigma Aldrich, Dorset, UK. Samples (30 μL) were diluted 1:10 in methanol:water (50:50) immediately prior to direct infusion into the ESI source. The dilution ratio was optimized to minimize potential carryover effects.
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5

Solvent Preparation for LC-MS Analysis

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Formic acid, acetic acid, LC-MS grade methanol and water, and HPLC grade acetone and buffer solutions were obtained from Sigma Chemical Co. (St. Louis, MO, USA).
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6

Analytical Standards Preparation for LC-MS

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Stock solutions of analytical grade phenolic standards (kaempferol, quercetin, myricetin, gallic acid, epicatechin, catechin) were purchased from Sigma-Aldrich (Vienna, Austria) and prepared in water/methanol mixtures. LC-MS grade methanol and water, ammonium formate, and formic acid were also purchased from Sigma-Aldrich.
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7

Antioxidant Capacity Evaluation Methods

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Folin–Ciocalteu reagent, DPPH, ABTS, TPTZ, potassium persulfate, gallic acid, Trolox and the other standards were purchased from Sigma-Aldrich (St. Louis, MO, USA). LC-MS grade methanol and water, glacial acetic acid, iron chloride hexahydrate, sodium carbonate and ethanol for the extraction were purchased from Merck KGaA (Darmstadt, Germany). Vanillic acid (≥97%), rutin (≥95%), catechin (≥99%), chlorogenic acid (≥95%), ferulic acid (≥99 %), cyanidin-3-O-glucoside (Cy-3-glu) (≥98%), ascorbic acid (>99%), quercetin (≥95%) and geraniol (≥98.5%) standards were also purchased from Sigma-Aldrich (St. Louis, MO, USA).
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8

Steroid Quantification Methodology

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Cortisol, cortisone and dehydroepiandrosterone (DHEA) were purchased from Koch-Light Laboratories LTD (Colnbrook, Great Britain); 7α-hydroxy-DHEA, 7β-hydroxy-DHEA, 7-oxo-DHEA, 16α-hydroxy-DHEA and D3-DHEA were from Steraloids (Newport, USA). D4-Cortisol was from CDN isotopes (Ponte-Claire, Canada). 2-hydrazinopyridine, ammonium formate, methyl tert-butyl ether, trifluoroacetic acid, homocystine, dithiothreitol, pyridine, p-fluoro-DL-phenylalanine, ethyl chloroformate, isooctane, ethanol, chloroform, sodium chloride, hydrochloric acid and potassium oxalate monohydrate were from Sigma-Aldrich (St. Louis, USA). LC-MS grade methanol and water as well as diethyl ether were from Merck AG (Darmstadt, Germany). The physiological solution was from B-Braun (Melsungen AG, Germany).
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9

Antioxidant Evaluation of Vaccinium myrtillus Leaves

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Folin–Ciocalteu (F-C) reagent, 2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,4,6-tri (2-pyridyl)-1,3,5-triazine (TPTZ), gallic acid and Trolox were purchased from Sigma-Aldrich (St. Louis, MO, USA). Ethanol, water and methanol HPLC grade, glacial acetic acid, iron chloride hexahydrate and sodium carbonate were purchased from VWR (Radnor, PA, USA). Vanillic acid, quercetin, rutin, chlorogenic acid, ferulic acid and catechin standards were also purchased from Sigma-Aldrich (St. Louis, MO, USA). LC-MS grade methanol and water, acetonitrile, sorbic acid (E-200), 5-fluorouracil and sodium acetate were purchased from Merck KgaA (Darmstadt, Germany).
Vaccinium myrtillus dry leaves were purchased from Bidah Chaumel (Murcia, Spain). They proceed from an organic field located in Huelva (Spain), and were collected in June 2022. Fresh leaves were air dried in dark conditions at room temperature in order to reach a moisture of 10.5%. They were grounded to an average particle size of 0.8 mm and stored at −20 °C until the extraction.
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