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5 protocols using 5 bromo 4 chloro 3 indolyphosphate

1

Immunoblotting of Plant Proteins

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Total proteins were harvested from leaf samples as described previously by Sun et al. (2018) using 2× SDS loading buffer (100 mm Tris (pH 6.8), 4% (w/v) SDS, 20% (v/v) glycerol and 0.2% (w/v) bromophenol blue) containing 10% β-mercaptoethanol. Proteins were isolated on 12.5% SDS polyacrylamide gels and then transferred onto polyvinylidene fluoride membranes (Ge Healthcare, Buckinghamshire, UK). The membranes were blotted with a rabbit anti-flag antibody (1:1000; Sigma–Aldrich, St. Louis, MO, USA), mouse anti-flag antibody (1:5000; Sigma–Aldrich), rabbit anti-GFP antibody (1:3000; Genscript, Nanjing, China) or rabbit anti-PLRV MP antibody (1:5000) [53 (link)]. Immunoreactive proteins were successively visualized by blotting with goat anti-rabbit AP antibody (1:10,000; Sigma–Aldrich), goat anti-mouse AP antibody (1:10,000; Sigma–Aldrich), goat anti-rabbit HRP antibody (1:3000; Sigma–Aldrich) or goat anti-mouse HRP antibody (1:3000; Bio-Rad, Hercules, CA, USA) followed by visualization using nitro-blue tetrazolium and 5-bromo-4-chloro-3-indolyphosphate (Sigma–Aldrich) or a chemiluminescence detection kit (GE Healthcare).
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2

In Situ Hybridization for Mouse Testis

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Sequences for antisense and sense probes were obtained from Allen Brain Atlas (Allen Institute for Brain Science, Seattle, WA, USA) and digoxigenin-labelled RNA probes were produced. Paraffin-embedded sections of adult mouse testis were deparaffinized, washed and digested and permeabilized with proteinase K and Triton X-100. Sections were washed and refixed in 4% PFA. After washing, sections were hybridized with either antisense or sense probes at 65 °C overnight, washed and blocked with 2% sheep serum, 2mg/ml BSA in PBS/Triton X-100. The sections were then incubated in anti-digoxigenin-AP antibody (Roche, Mannheim, Germany) 1:2000 in blocking solution at 4 °C overnight, washed and detected in alkaline phosphatase buffer with nitro-blue tetrazolium and 5-bromo-4-chloro-3′-indolyphosphate (Sigma-Aldrich) as substrates in the dark.
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3

Quantifying Cardiac IL1β Expression

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Western blotting analysis was performed to evaluate IL1β expression in each cardiac tissue (Ewees et al., 2019) . Simply, samples were homogenized and then separated on a 10 % SDS-PAGE gel. Protein bands were blotted to a nitrocellulose membrane by a semi-dry blotter (Bio-Rad). The blot was blocked, probed overnight at 4 °C with IL1β antibody or GAPDH antibody, and incubated with alkaline phosphatase-tagged secondary antibodies for 1 h at room temperature. Each blot was analyzed by 5-bromo-4-chloro-3-indolyphosphate and nitro-blue tetrazolium colorimetric detection method (Sigma-Aldrich Co., USA). These bands were analyzed by Image-J and GraphPad Prism-5 software programs.
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4

Biochemical Analysis of Paraoxonase-1

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5-bromo-4-chloro-3`-indolyphosphate (BCIP), alkaline phosphatase-labelled anti-mouse secondary antibody, lysozyme, nitro-blue-tetrazolium (NBT) reagent, paraoxon-ethyl, protease inhibitor cocktail, urea, m-cresol purple, δ-valerolactone and tergitol NP-10 were purchased from Sigma–Aldrich, Bangalore, India. Mouse anti-PON1 primary antibody and 5-thiobutyl butyrolactone (TBBL) was a kind gift from Dr. Richard W James, University of Geneva, Switzerland and Dr. Tawfik D.S, Department of Biological Chemistry, Weizmann Institute of Science, respectively. Stratagene's Quick change site directed mutagenesis kit was purchased from Agilent Technologies, Gurgaon, India. Protein molecular weight markers and Bradford reagent were purchased from Bio-Rad, Gurgaon, India. DNA primers (oligonucleotides) used were synthesized and purchased from Sigma Aldrich, Bangalore, India. Chlorpyrifos oxon (CPO) and diisopropylfluorophosphate (DFP) were purchased from Chem. Service, Inc., West Chester, PA, USA. All other reagents used were of analytical grade. Buffers used were prepared in double distilled water.
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5

Protein Extraction and Western Blot Analysis

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Protein extraction and western blot analysis were performed as described previously [30 (link)]. Briefly, total proteins were extracted from 0.1-g leaf samples by grinding into fine powder in liquid nitrogen, followed by adding 300 µL of 2 × SDS buffer (100 mM Tris (pH 6.8), 4% (w/v) SDS, 20% (v/v) glycerol, and 0.2% (w/v) bromophenol blue) with subsequent heating at 100 °C for 10 min. Proteins were separated in 12.5% SDS polyacrylamide gel by electrophoresis and transferred to nitrocellulose membrane (GE Healthcare, Buckinghamshire, UK) using a mini trans-blot electrophoretic transfer cell (Bio-Rad).
Western blot analysis was performed using the rabbit anti-flag antibody (Sigma-Aldrich, St Louis, MO, USA) diluted at 1:1000, or mouse anti-flag antibody (Sigma-Aldrich) diluted at 1:5000, or rabbit anti-GFP antibody (GenScript, Nanjing, China) diluted at 1:3000, or rabbit anti-PLRV movement protein (MP) antibody [45 (link)] diluted at 1:5000, as a primary antibody. Incubation was then performed with goat anti-rabbit IgG (Sigma-Aldrich) diluted at 1:3000, or goat anti-mouse HRP (Bio-Rad) diluted at 1:3000, as a secondary antibody. Finally, the membranes were detected using the nitro-blue tetrazolium and 5-bromo-4-chloro-3-indolyphosphate (Sigma-Aldrich), or with a superior chemiluminescence detection kit (GE Healthcare) according to the manufacturer’s instructions.
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