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3 protocols using cd45 2 percp cy5

1

Multiparameter Flow Cytometry Staining

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Cells were stained for 20 min on ice in MACS buffer (2% FCS in PBS with 1 mM EDTA) at 0.5 to 1 × 106 cells per well in 96-well round-bottom plates unless otherwise specified. The following monoclonal antibodies were used: B220–BV785 (BioLegend), ICAM1–biotin (BD), followed by streptavidin–BV711 (Fisher), CD45.2–PerCP-Cy5.5 (Tonbo), IgMa–FITC (Fisher), CD40–PE (Fisher), CD23–PE-Cy7 (BioLegend), CD45.1–BV605 (BioLegend), CD40L–PE (BioLegend), and CD40L–biotin (eBioscience), followed by streptavidin–A647 (Fisher). Dead cells were excluded using Fixable Viability Dye eFluor780 (eBioscience no. 65-0865-18). All samples were run on a BD LSRII or BD FACSymphony A1 at 5,000 to 10,000 events per second. Flow cytometry data were analyzed using FlowJo (v10.8.1).
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2

Quantifying Pulmonary Progenitor Cells

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Lung cells were obtained from digesting masticated lungs in a solution of 5% fetal bovine serum, 1 mg/mL collagenase type IV, and 0.02 mg/mL DNase I (Sigma-Aldrich) in RPMI 1640 medium for 45 minutes at 37oC. Peripheral blood mononucleocytes (PBMCs) were isolated from blood drawn from the right jugular. Red blood cells (RBCs) were lysed using RBC lysis buffer (BioLegend). For quantifying the number of PACs in the lungs and peripheral blood, both PBMCs and lung cells were stained with anti- Ter119-Pacific Blue, CD11b-redFuor (Tonbo Biosciences, catalog #10141–234 and #80–0112), CD31-PECy7 (BioLegend, catalog #102524), and DAPI. To quantify engraftment, PBMCs were stained with anti-Ter119-Pacific Blue, CD45.1-PE (BD Biosciences, catalog #561872), CD45.2-PerCPCy5.5 (Tonbo Biosciences, catalog #65–0454), and DAPI. Flow cytometry was performed using a BD LSRFortessa and the data analyzed using FlowJo. Antibody-conjugated beads (Thermo Fisher) were used for single stain compensation controls. Unstained cells and fluorescence-minus-one controls were used for gating populations in all flow cytometry experiments.
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3

Multicolor FACS Analysis of B Cell Subsets

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Cells were resuspended at a concentration of 106 cells/100 μl fluorescence-activated cell sorting (FACS) buffer (1X PBS, 2 mM EDTA, 1% BSA). Cells were stained with Fc block (BD Biosciences) for fifteen minutes, stained with antibody-fluorophores for one hour on ice, then washed with ten volumes of FACS buffer. The following antibodies were used: B220-PE-Cy7 (RA3–6B2, Tonbo), CD11b-APC-Cy7 (M1/70, Tonbo), CD45.1-FITC (A20, Tonbo), CD45.2-PerCP-Cy5.5 (104, Tonbo), CD90.2-APC-Cy7 (30-H12, BioLegend), F4/80-APC-Cy7 (BM8, BioLegend), CD138-BV711 (281–2, BD), CD21-APC (B-ly4, BD), CD43-PE (S7, BD), GL7-eFluor660 (GL-7, eBioscience), CD23-eFluor450 (B3B4, eBioscience), IgM-FITC (II/41, eBioscience), Annexin V-APC (kit number 88–8007-72, eBioscience), and Zombie Yellow Fixable Viability Dye (kit number 423104, BioLegend). An LSRII was used for analysis and an ARIAII was used for sorting (BD Biosciences). All flow cytometry data was analyzed with FlowJo version 9.9.5. Preceding all flow cytometry analyses presented is the following gating strategy: 1) lymphocytes (forward scatter [FSC]-area by side scatter [SSC]-area), 2) singlets (FSC-width by FSC-height), 3) singlets (SSC-width by SSC-height), 4) live cells (viability dye), 5) exclusion of non-B cell lineage cells (Thy1.1F4/80CD11b).
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