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2 protocols using nocodazole

1

Quantifying Neural Stem Cell Proliferation

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To monitor NSC proliferation, we analyzed NSCs by immunostaining of mouse anti–Ki-67 antibody (BD Pharmingen) and Click-IT EdU detection (Invitrogen) after 4 h exposure to EdU, and co-stained with rabbit anti-Sox2 antibody (EMD Millipore) or DAPI (Sigma) to count all cells. Cell images were obtained on AF6000 (Leica) and BZ-X (Keyence). Cell counting was performed using the ImageJ software for images captured on the AF6000, and Hybrid cell count (Keyence), an algorithm for cell counting, for images captured on the BZ-X. Six to eight images were collected under each condition. Inhibitors used for cell culture were obtained from the indicated suppliers: bafilomycin A1 (Sigma), SAR405 (Cayman Chemical), Dynasore (Adipogen), thapsigargin (Adipogen), nocodazole (Adipogen), DAPT (Calbiochem), AG1478 (Cell Signaling Technology), Torin-1 (Cayman Chemical), and rapamycin (Wako). To measure protein stability, cells were incubated with 10 µg/ml cycloheximide (Sigma) to block protein synthesis.
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2

Comprehensive Cell Signaling Assays

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Lipofectamine 2000, Invitrogen (11668019); Lipofectamine RNAiMAX, Invitrogen (13778150); Polybrene Infection/Transfection Reagent, Sigma-Aldrich (TR-1003); GFP-Trap magnetic agarose, ChromoTek (gtma-20); Trypsin Gold Mass Spectrometry Grade, Promega (V5280); Protein G Sepharose, BioVision (6511); Thymidine, Chem-Impex (00306); Propidium iodide, Sigma-Aldrich (P4170); RNase A, Research Products International (R21750); Nocodazole, AdipoGen (AG-CR1-0019); (+)-S-Trityl-L-cysteine, Alfa Aesar (L14384); Puromycin dihydrochloride, Sigma-Aldrich (P8833); Blasticidin S hydrochloride, 10 mg/ml in HEPES buffer, Alfa Aesar (J67216); Hygromycin B, 50 mg/mL in PBS, Invitrogen (10687010); cOmplete Protease Inhibitor Cocktail, Roche (5056489001); Sodium β-glycerophosphate pentahydrate, Alfa Aesar (L03425); Sodium fluoride, Chem-Impex (01523); Sodium pyrophosphate decahydrate, Fisher (S390); Sodium orthovanadate, MP Bio (0215966410); UBE1, R&D Systems (E-304); UBE2C, R&D Systems (E2-654); UBE2S, R&D Systems (E2-690); securin, Abcam (ab87664); D-biotin, Chem-Impex (00033); Streptavidin Alexa Fluor 568, Invitrogen (S11226); Pierce™ High Capacity Streptavidin Agarose, Thermo Fisher (20359); Streptavidin-conjugated HRP, GeneTex (GTX85912); ProLong™ Diamond Antifade Mountant with DAPI, Thermo Fisher (P36971); Clarity™ Western ECL Substrate, Bio-Rad (1705061).
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