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5 protocols using immobilized tcep disulfide reducing gel

1

Thiol Oligomer Immobilization on Gold

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In order for thiol bond formation between the oligo and the gold surface to proceed as expected, the 5′ thiol-modified oligomers require a reduction of the disulfide bonds prior to application. Immobilized TCEP Disulfide Reducing Gel (Thermo Fisher Scientific, Waltham, MA) was washed several times with 100 μM 1×TE-MgSO4 buffer prior to oligo addition in a 2:1 TCEP gel: oligo ratio, and the mixture was incubated for 1 h on a rocker platform at 23°C. After incubation and a 1500 rpm spin for 2 min, the supernatant with reduced thiol-modified oligomers was transferred to a clean tube.
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2

PEGylated PLGA Nanoparticle Synthesis

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Nanoparticles were prepared via single-step nanoprecipitation as previously described with modifications. Briefly, 0.75 mg of PLGA, 0.15 mg of drug cocktail, 0.375 mg of TPGS, 0.04 mg of DOPC, 0.04 mg cholesterol and 0.08 mg DSPE-PEG(2000)-maleimide in 40 μl of DMSO were mixed as the oil phase and each time 10 μl of oil phase was added to 280 μl of deionized water dropwise under gentle stirring. The NPs were self-assembled with continuous stirring for 30 minutes at room temperature. The ratio of the volumes of the oil and water phases was fixed at 1/7 (v/v) throughout all of the experiments. For peptide conjugation, peptide was reduced using immobilized TCEP disulfide reducing gel (Thermo Scientific) according to manufacturer’s recommendations. Twenty-five μl of 1 mg/ml of CTCE-9908 peptides or scramble peptides were added into the emulsion where it reacted with DSPE-PEG(2000)-maleimide. Four hours later, the unreacted maleimide groups were quenched by adding l-cysteine. The solution was centrifuged at 16,220 rpm for 30 min at 25 °C to collect the NPs, and the NPs were then resuspended in water in the volume equal to the emulsion for characterization. The same procedure was used to synthesize C6-loaded NPs.
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3

Quantifying Mycothiol Redox State

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Pre-reduced uncoupled roGFP2 and Mrx1-roGFP2 (1 µM) were incubated with mycothiol solutions (1 mM total) containing increasing fractions of MSSM. The total concentration of MSH (MSH total) refers to MSH equivalents i. e MSHtotal = [MSH]+2[MSSM]. OxDMSH is the fraction of MSH total that exists as [MSSM] and can be conveniently calculated using the following formula: Reduced from of mycothiol (MSH) was obtained by reducing MSSM with immobilized TCEP disulfide reducing gel (Thermo Scientific) under anaerobic conditions as per manufacturer's instructions.
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4

Thiol-Gold Surface Immobilization

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In order for thiol bond formation between the oligo and the gold surface to proceed as expected, the 5′ thiol-modified oligomers require a reduction of the disulfide bonds prior to application. Immobilized TCEP Disulfide Reducing Gel (Thermo Fisher Scientific, Waltham, MA) was washed several times with 100 µM 1 × TE-MgSO4 buffer prior to oligo addition in a 2:1 TCEP gel:oligo ratio, and the mixture was incubated for 1 h on a rocker platform at 23 °C. After incubation and a 1500 rpm spin for 2 min, the supernatant with reduced thiol-modified oligomers was transferred to a clean tube.
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5

Biofunctionalized Surfaces for Biosensing

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Poly-l-lysine hydrobromide (MW =
15–30 kDa by viscosity), EDC, NHS, tablets for 10 mM PBS solution
(pH 7.4), 3-trichlorosilylpropyl methacrylate, 2-hydroxyethyl methacrylate
(HEMA), ethylene glycoldimethacrylate (EGDMA), tridecafluoro-(1,1,2,2)-tetrahydrooctyl-trichlorosilane,
bovine serum albumin, ammonium persulfate (APS), and NaCl salt were
purchased from Sigma-Aldrich. Methyl-OEG4-NHS ester, biotin-OEG4-NHS ester, Mal-OEG4-NHS ester, the Zeba spin desalting
columns (7 kDa MWCO, 5 mL), the immobilized TCEP disulfide reducing
gel (tris[2-carboxyethyl] phospine hydrochloride immobilized onto
4%cross-linked beaded agarose), and the streptavidin-Fluorescein conjugate
were obtained from ThermoFisher Scientific. Oligonucleotides were
purchased from Eurofins Genomics and used as received. SiO2 QCM chips (with fundamental frequency of 5 MHz) were purchased from
Biolin Scientific. Poly(dimethylsiloxane) Sylgard 184 and curing agent
were used as received from Dow Corning. Ormostamp material and MA-T1050
were purchased from Microresist. The PNA probes were synthesized using
the materials and the procedure previously described for PNA2,52 (link) as briefly reported in the Supporting Information together with the characterization
of the newly synthesized PNA3 and PNA4.
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