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The DSQ II is a compact, high-performance mass spectrometer designed for various analytical applications. It features a dedicated dual-stage quadrupole mass analyzer that provides accurate and reliable mass detection. The DSQ II is equipped with an electrospray ionization source and can be interfaced with liquid chromatography systems for efficient sample analysis.

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45 protocols using dsq 2

1

GC-MS Analysis of Lichen Metabolites

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In addition, parts of the collected samples were analyzed by GC-MS to investigate the secondary metabolite composition. A measure of 500 mg of dry lichen biomass was macerated in 10 mL methanol for 24 h at 300 rpm. The obtained extract was analyzed by a Trace GC-MS Ultra system with DSQII (Thermo Scientific, Waltham, MA, USA). A TriPlus autosampler was employed to inject 1 µL of sample volume in split mode onto a SGE BPX5 column (30 m, I.D 0.25 mm, film 0.25 µm); injector temperature was set to 280 °C. Initial oven temperature was kept at 50 °C for 2.5 min. The temperature was increased with a ramp rate of 10 °C/min to 320 °C with a final hold step for 3 min. The carrier gas in this study was helium with a flow rate of 0.8 mL/min and a split ratio of 8. The mass spectra and chromatograms were recorded at 70 eV (EI). Detection of masses took place between 50 m/z and 650 m/z in the positive mode [53 (link)]. Compounds were identified by spectral comparison with a NIST/EPA/NIH MS library version 2.0.
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2

Detailed Compound Characterization Protocol

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Completion of
the reactions and purity of the compounds were monitored
by thin layer chromatography (TLC) on silica gel plates (60 F254; Merck), visualizing with iodine vapors. A Veego make silicon
oil bath-type melting point apparatus was used to determine the melting
points and are uncorrected. The IR spectra were recorded using attenuated
total reflectance and KBr disc methods for liquid and solid samples,
respectively, on a Bruker FT-IR spectrometer, model alpha. The PMR
spectra were recorded using a Bruker 300 MHz spectrometer in deuterated
solvents (CDCl3 and DMSO-d6) (chemical shifts in δ ppm; s is used for a singlet; m, for
a multiplet; t, for a triplet; bs, for a broad singlet; bm, for a
broad multiplet; and bt, for a broad triplet). Mass spectral data
were obtained on a scientific mass spectrometer (Thermo, DSQ II).
Elemental analyses were performed on a Thermo Fisher FLASH 2000 organic
elemental analyzer. All of the final GAs offered results within ±0.4%
of the calculated values of carbon, hydrogen, and nitrogen elements.
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3

GC-MS Analysis of Complex Samples

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GC-MS analysis was performed on a gas chromatograph (GC), (Thermo Fisher Focus GC) coupled to a single-quadrupole mass spectrometer (Thermo Fisher DSQ II). The instrument was equipped with a non-polar 30 m × 0.25 mm × 0.25 μm DB-5MS column (Agilent J&W) and a split/splitless injector. Carrier gas was helium at a constant flow rate of 1 mL min−1. GC program started at 80°C (hold time 1 min), continued with 50°C min−1 to 140°C, followed by 6°C min−1 to 280°C (hold time 5 min). Injection and transfer line temperatures were set up at 200°C, respectively 280°C. For mass spectrometry (MS) analyses, the following standard working conditions were applied: electronic impact ionization, positive mode detection, ion source at 220°C, detector voltage 70 eV, full scan mode m/z 50–650 (scan time 0.26 sec).
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4

GC-MS Analysis of Organic Compounds

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Gas Chromatography-Mass Spectrometry (GC-MS) was performed using a gas chromatograph (Focus GC-Thermo Fisher, Milan, Italy) equipped with a Varian VF-5m (30 m × 0.25 mm × 0.25 μm) capillary column, combined with a single quadrupole mass spectrometer (DSQII-Thermo Scientific, Milan, Italy) [12 (link)]. The samples were diluted 1:1000 in ether. One microliter of the sample was injected in spitless mode at a temperature of 220 °C. The column flow rate was 1 mL min-1 using helium as carrier gas. The initial GC oven temperature was 55 °C, increased by 4 °C min−1 to 240 °C with a hold time of 3 min. The transfer line temperature was 250 °C. The MS was operated using electron impact (EI) at an ionization energy of 70 eV. The ion source temperature was set at 250 °C. The solvent delay for the mass spectrometry was set at 3 min and the EI scan mode was used for identification, covering the range of 25–350 m/z. The compound was identified by comparison with the NIST database (https://www.nist.gov/pml/atomic-spectra-database, accessed on 6 June 2021). The instrumentation performance, chromatograms, mass spectra, and initial data processing were carried out with the supplied Xcalibur software (Thermo Fisher, Milan, Italy).
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5

Chemical Fingerprinting of G. fragrantissima Essential Oils

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Chemical fingerprinting of wild and commercial EOs of G. fragrantissima were carried out by GC-MS using the model DSQ II (Thermo Scientific, USA) with a fused silica capillary column (30 m by 0.32 m i.d., the film thickness of 0.25 µm) and a TR 50 mass spectrometer. To perform GC-MS, an electron ionization system was maintained at 70 eV and the flow rate of the carrier gas (helium) was kept at 1 ml/min. The injector and detector lines were set at 250 °C and 290 °C, respectively. The initial oven temperature of 50 °C was kept for 1 min and subsequently raised to 310 °C gradually increased by 20 °C/min with a holding time at 310 °C for 15 min. A postrun temperature of 70 °C for 10 min was adequate for the subsequent insertion. The diluted samples (1:100 (v/v) were injected manually in split-less mode. The relative percentage of compounds were estimated by normalizing peak areas. Identification of compounds was achieved by matching the experimental mass spectra to the mass spectra available in the NIST library.
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6

Gas Chromatography-Mass Spectrometry Analysis

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Thermo Scientific DSQ™ II gas chromatography coupled with a mass spectrometry detector, was performed with the same conditions that were previously described in Gas Chromatography. MS data were collected and processed on an Xcalibur™ version 1.4.1. For mass spectrometry conditions, the electron ionization was 70 eV.
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7

Quantifying n-Hexadecane in Supernatants

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The n-hexadecane content in each supernatant was extracted using an equal volume (1:1 v/v) of ethyl acetate. Afterwards, 1 mL of the polar phase was analyzed using a Thermo Scientific DSQII single quadrupole gas chromatography mass spectrometry (GC/MS) system with an HP-5MS column (operating at a pulsed split ratio of 1:1 and a split flow rate of 1 mL/min). The oven temperature was first set and maintained at 40°C for 3 min, followed by a gradual temperature increase at a rate of 6°C/min up to 300°C, with a final 2-min hold at that temperature. The quantification of n-hexadecane is achieved by comparing the peak areas of the test sample with those of the standard sample. The amount of n-hexadecane was adjusted by considering its mass spectrometer response factors, which were determined by analyzing dilution series of commercial standards.
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8

Manure Volatile Compound Analysis

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Manure volatile analyses were carried out on a gas chromatograph (Focus GC, Thermo, USA) coupled to a single quadrupole mass spectrometer (Thermo DSQ II, USA). The MS parameters used were as follows: electron impact ionization energy 70 eV and an m/z range from 41 to 300, and the spectra were collected at 6 scans/sec. The GC was equipped with a split/splitless injection port with an SPME glass liner (1 mm ID x 120 mm straight long, ThermoFischer, USA) and a DB5 column (30 m × 0.25 mm × 0.25 μm; J&W Scientific, Folsom, CA, USA) with helium carrier gas (1.2 ml min–1). The injection port was maintained at 250 °C, and the SPME fiber was left extended in a splitless state for 5 min before the injector split was activated. After desorption, the fiber remained in the injector port for another 3 min. The oven temperature was programmed to start at 60 °C for 1 min, increase by 5 °C min–1 to 250 °C and then hold at this last temperature for 15 min. The transfer line temperature was 280 °C. Xcalibur software (Thermo Fisher) was used for data processing and reporting of GC-MS analyses. Target compounds were identified by comparing their mass spectra with those in the Wiley 275L library and matching their retention times and mass spectra to those of authentic standards.
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9

Analysis of P. heptaphyllum Essential Oil

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The analysis of the chemical constituents of the essential oil of the resin of P. heptaphyllum was performed using a gas chromatograph (Trace Ultra, Thermo Scientific®) coupled to a mass spectrometer (DSQII, Thermo Scientific®) as previously described.[21 ]
The identification of the substances contained in the oil and resin was performed by comparing the similarity of the obtained mass spectra obtained with those in the literature.[22 23 ] The relative percentages of these compounds were calculated from the mean areas of the chromatograms.
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10

GC-MS Analysis of Commercial CEO

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To obtain a comprehensive understanding of the chemical composition within the commercially procured CEO, Gas Chromatography-Mass Spectroscopy (GC-MS) was employed. This analysis involved the utilization of a Trace GC Ultra (Thermo Scientific, Waltham, MA, USA) integrated with an MS (DSQ II, Thermo Scientific, Waltham, MA, USA), employing a DB-5MS capillary column (30 m × 0.25 mm × 0.25 μm, containing the stationary phase). Helium gas functioned as the mobile phase, facilitating the transport of volatile constituents. The initial column temperature was set at 50 °C (held constant for 2 min to eliminate the solvent), followed by a consistent increase at a rate of 6 °C/minute up to 250 °C.
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