The largest database of trusted experimental protocols

72 protocols using liberase dh

1

Patient-Derived Glioma Cell Culture

Check if the same lab product or an alternative is used in the 5 most similar protocols
Patient-derived glioma cell cultures were generated as previously described40 . Briefly, tumor tissue was dissociated mechanically and enzymatically (Liberase DH, Roche) prior to separation of myelin and debris by sucrose centrifugation. Neurosphere-generating cultures were maintained in serum-free media supplemented with B27 (ThermoFisher), EGF, FGF, PDGF-AA, PDGF-BB (Shenandoah Biotechnology), and Heparin (StemCell Technologies). All cultures were validated and monitored by STR-fingerprinting (Supplementary Table 2) and verified to be mycoplasma-free within the previous 6 months (MycoAlert Plus, Lonza). SU-DIPG6 and SU-DIPG13 have been previously referred to as and are identical to SU-DIPG-VI and SU-DIPG-XIII, respectively. Clinical characteristics and STR fingerprints of all DIPG and pSCG cultures30 (link) along with QCTB-R0594 (link) used here have been previously reported. For all studies using human tissue, informed consent was obtained per guidelines of the approved Stanford Institutional Review Board protocol.
+ Open protocol
+ Expand
2

Digit Regeneration Protocol in Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
All animal experiments were carried out according to procedures approved by The Jackson Laboratory Animal Care and Use Committee (ACUC). The following mouse stocks were obtained from The Jackson Laboratory: (B6)C57BL/6J-#000664, (NSG)#005557, (Ncr1gfp), #022739, (Prf1 knockout [KO])#022739, (Klrk1) # 022733, and (UBC-GFP) # 004353. Ncr1tm1.1(icre)Viv (MGI:5308410) mice were a kind gift from Eric Vivier and Stephen Waggoner. NKP46 DTR mice were generated by intercrossing Ncr1tm1.1(icre)Viv (MGI:5308410) with ROSADTR (MGI:3772576) mice. P3 amputations performed on age-matched 8- to 10-week-old male mice anesthetized with isoflurane before amputation of the distal third of the terminal phalanges (Storer and Miller, 2020 (link)). Two digits per hindpaw were amputated, with the middle digit used as an uninjured control (Figure 1A). Buprenorphine was given at 1 mg/kg via a subcutaneous injection. After amputation, the digits were sprayed with Cavilon No-Sting Barrier Film (3M) to minimize potential infection. For NKP46+ cell depletion in NKP46 DTR mice, 200 ng DT was injected intravenously (i.v.) at 3-day intervals. Blastemal cells were isolated via mechanical dissociation on glass dishes (MatTek, P35G-0-10-C) and then digested with 1 U/mL Liberase-DH (Roche, 5401054001) in tubes for 60 min at 37°C. Dissociated cells were used for FC and cytotoxicity assays.
+ Open protocol
+ Expand
3

Isolation of Mouse Intestinal Lymphoid Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mouse ILCs were prepared as described [14 (link)]. Briefly, the small intestines were extracted from C57BL/6 mice. After removal of the surrounding mesentery and Peyer’s patches, and fecal matters, the small intestines were minced into longitudinal pieces of 7 cm, and further cut into 1 cm pieces, followed by vigorous washes in phosphate buffered saline (PBS: 137 mM NaCl, 2.7 mM KCl, 10.1 mM Na2HPO4, and 2 mM KH2PO4, pH 7.4). They were further treated with 1 mM EDTA/PBS at 37°C for 20 min for removal of the intraepithelial lymphocyte and intestinal epithelial cell fractions. Thereafter, the samples were harvested by centrifuging for 20 min at 500×g, followed by vigorous washing for 20 sec in PBS. Further, they were minced into 1–2 mm pieces, and incubated in 10 ml of pre-warmed RPMI medium supplemented with 2% fetal bovine serum containing 20 μg/ml Liberase DH (Roche, Basel, Switzerland) and 50 μg/ml DNase I (Roche) at 37°C for 30 min. The cells were subsequently passed through a 70 μm EASY strainer (BD Biosciences, San Jose, California, USA), and a 37 μm nylon filter (BD Biosciences). The flow-through cells were harvested by centrifuging for 5 min at 500×g, 4°C, and then used as an ILC fraction.
+ Open protocol
+ Expand
4

Isolation of Corneal Epithelial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
After cutting eyes in half and removing the lens, corneas were placed in a small amount of BSS (18 ) under a dissecting microscope, and dissected away from other eye tissue using a scalpel. Corneas were then placed in BSS containing 0.25 mg/ml Liberase DH (Roche Diagnostics Corp., Indianapolis, IN), and incubated on a rotator at 37°C for 1–2 hours. When the corneal structure appeared to have largely disintegrated, cells were diluted by adding 5–10 volumes of BSS + 5% FCS, and then passed through a 70 μm cell strainer (Becton Dickinson, Franklin Lakes, NJ) to remove any debris or large aggregates remaining. The cells were then pelleted by centrifugation at 1200 rpm for 8 minutes, and used in staining experiments.
+ Open protocol
+ Expand
5

Establishing Lung Cancer Xenograft Models

Check if the same lab product or an alternative is used in the 5 most similar protocols
Surgical specimen samples from lung cancer patients were obtained from Osaka Medical Center for Cancer and Cardiovascular Diseases, with the patients' informed consent. Animal studies were performed in compliance with the guidelines of the institutional animal study committee of Osaka Medical Center. Primary xenograft tumours were generated by inoculating small pieces of patient tumours into immunodeficient mice27 (link). Surgically resected tissues were minced and washed with HBSS (Invitrogen). Specimens were digested in DMEM supplemented with 0.26 U ml−1 Liberase DH (Roche) and 1% penicillin/streptomycin (Invitrogen) at 37 °C for 1–2 h. Digested tissue suspensions were passed through 500- and 250-μm metal mesh filters for removal of undigested fragments. Suspensions were further filtered through 100- and 40-μm cell strainers (BD Falcon). Fragments on the cell strainer and cells in the flow-through fractions were collected separately, and each were washed with HBSS and cultured in StemPro hESC medium (Gibco). After processing, the tumour fragments spontaneously form cancer-tissue-originated spheroids. One hundred cancer-tissue-originated spheroids were then suspended in 50 μl of matrigel (Corning Life Sciences) and subcutaneously transplanted into nonobese diabetic severe combined immunodeficient mice.
+ Open protocol
+ Expand
6

Preparation and Xenograft of CTOS Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
For both surgical specimens and xenografts, CTOS were prepared as previously described with slight modifications.8 Briefly, tumors were mechanically minced and incubated for 90 minutes at 37°C with continuous stirring, in DMEM/Ham's F12 medium (Wako Pure Chemical Industries, Osaka, Japan) containing Liberase DH (Roche, Basel, Switzerland) at a final concentration of .28 units/mL. DNase I (Roche) was added at 10 μg/mL, followed by an additional 15 minutes of incubation. The digestion solution was serially strained using mesh filters of 500, 250, 100 and 40 μm (BD Falcon, Franklin Lakes, NJ, USA). Fractions were recovered between 100‐250 μm (Fr.100‐250) and 40‐100 μm (Fr.40‐100). Fr.40‐100 samples were cultured for 24‐48 hours at 37°C under 5% CO2, 20% O2, in STEMPRO hESC SFM (Invitrogen, Carlsbad, CA, USA) to form CTOS. Fr.100‐250 samples were mechanically disrupted by raising and lowering the plunger several times using a 27‐gauge needle, and then cultured as described for Fr.40‐100. To generate xenograft tumors of CTOS lines, freeze‐stocked CTOS12 were thawed, and cultured for 7 days in STEMPRO hESC SFM. We then suspended 2000 CTOS in a 1:1 mixture of medium and Matrigel GFR (Corning, Corning, NY, USA), and subcutaneously injected 1000 CTOS each into 2 sites of dorsal skin in NOD/scid mice.
+ Open protocol
+ Expand
7

Isolation and Staining of Epithelial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue was digested at 37 °C for 0.5 h in the presence of 0.1 WU Liberase DH and 30 μg ml−1 DNase (Roche). Cells were stained with PE-conjugated anti-H-2Dd antibody (34-5-8S) diluted 1:100, fixed in 2% formalin/PBS for 15 min at 4 degrees Celsius and cytospun onto glass slides47 (link). Intracellular staining was performed with polyclonal rabbit anti-cytokeratin (DAKO Z0633 at a 1:100 dilution) followed by AF488-conjugated goat-anti-rabbit at a 1:200 dilution (Invitrogen) and counterstained using DAPI. Images were acquired on a Leica SP5 and analysed using ImageJ.
+ Open protocol
+ Expand
8

Isolation of Leukocytes from Murine and Human Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mouse uterus, spleen, liver, lung, PP, and lymph nodes were processed using enzymatic protocol. Minced tissues were incubated 2 × 15 min with HBSS (PAA), 10% FCS (Life Technologies), 5 mM EDTA (Sigma), 15 mM HEPES solution (Life Technologies) on a rotator at 37°C, then digested during 30 min with RPMI 1640 containing 2% FCS, 30 μg/ml DNase I (Roche), and 0.1 WU/ml Liberase DH (Roche). Digested tissues were filtered and smashed with a syringe plunger on a cell strainer to mechanically dissociate the remaining bits of tissues. Leukocytes were enriched on an 80%/40% Percoll (GE Healthcare Life Sciences) gradient. Human decidua and endometrium tissues were mechanically processed. Leukocytes were enriched by layering on Lymphoprep (Axis-Shield).
+ Open protocol
+ Expand
9

Confluent HL-1 Cells Monolayer Detachment

Check if the same lab product or an alternative is used in the 5 most similar protocols
Confluent HL-1 cells were treated as indicated and incubated with dissociation buffer (liberase DH 0.065 U/ml, Roche, Basel, Switzerland; dispase II 2.5 U/ml, Sigma-Aldrich) at 37 °C until detachment of intact cell monolayers from the well bottom. After replacement of the dissociation buffer by Hank’s balanced salt solution (HBSS), the monolayers were mechanically stressed by horizontal rotation at 1250 rpm for 5 min. The resulting monolayer fragmentation was determined using a binocular stereomicroscope (Leica microsystems, Wetzlar, Germany). To test for Ca2+ insensitivity of cell cohesion, HL-1 monolayer were detached from well bottom by dissociation buffer and pre-incubated with indicated mediators for 60 min in Claycomb medium with 1.8 mM Ca2+ added. After switching to medium containing 5 mM of the Ca2+ chelator ethylene glycol-bis(2-aminoethylether)-N,N,N′,N′-tetraacetic acid (EGTA) and the corresponding mediators, floating monolayers were incubated further for 90 min. Subsequently, monolayers were subjected to mechanical shear stress as described above. Per independent experiment, duplicates were performed per condition with their mean value taken for statistical analysis.
+ Open protocol
+ Expand
10

Isolation and Functional Analysis of Cardiomyocytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following echocardiography, cardiomyocytes were isolated as previously described [3 (link), 18 (link), 20 (link)–23 (link)]. Briefly, the hearts were removed and retrograde perfusion was performed with buffer, followed by 0.25 mg/ml Liberase DH (Roche), 0.14 mg/ml 2.5% Trypsin (Gibco) and 12.5 μM CaCl2 for 5–7 minutes. Cells were dissociated by repeated pipetting and then filtered to remove cellular debris. Cardiomyocytes were exposed to increasing concentrations of CaCl2 (to minimize the calcium paradox) and then plated on laminin-coated glass chambers.
Cardiomyocyte sarcomere function was examined using the Soft Edge MyoCam system (IonOptix Corporation), as previously described [3 (link), 18 (link), 20 (link)–23 (link)]. Only myocytes with normal sarcomeric appearance (absence of sarcomeric blebs) were used in these experiments. Peak shortening (sarcomere BL% peak height; cellular equivalent of %FS), time to 90 percent of peak shortening (TPS90), time to 90 percent relengthening (TR 90), and velocities of shortening (-dL/dt) and relengthening (+dL/dt) were measured following stimulation at 1 Hz.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!