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Tris buffered saline (tbs)

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Sourced in Denmark, United States

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13 protocols using tris buffered saline (tbs)

1

Immunohistochemical Analysis of Tissue Samples

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Paraffin-embedded, 3-μm tissue sections were mounted onto SuperFrost slides, deparaffinised in xylene and ethanol of graded concentrations. For antigen retrieval, the slides were treated in a microwave oven in a solution of TRS (Target Retrieval Solution, High pH, Dako, Denmark) for 30 min (2 × 6 min 360W, 2 × 5 180W, 2 × 4 min 90 W). After cooling down at room temperature, they were transferred to 0.3% hydrogen peroxide in methanol, for 30 min, to block endogenous peroxidase activities. Sections were rinsed with Tris-buffered saline (TBS, Dako, Denmark) and incubated with rabbit primary antibodies against: cathepsin K (Abcam, UK; ab 19027, dilution 1 : 200), and with mouse monoclonal antibody against VEGF (Dako, Denmark, clone VG1, dilution 1 : 300), CD34 (Dako, Denmark, clone QBend 10, dilution 1 : 50). Immunoreactive proteins were visualized using adequate EnVision-HRP kit (Dako, Carpinteria, CA, USA) according to the instructions of the manufacturer. Visualisation was performed by incubation of the sections in a solution of 3,3’-diaminobenzidine (Dako, Denmark). After washing, the sections were counterstained with Mayer’s haematoxylin and mounted.
For each antibody and for each sample, a negative control was processed. Negative controls were carried out by incubation in the absence of the primary antibody and always yielded negative results.
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2

Immunocytochemistry of Isolated Cells

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Before the immunocytochemistry assay, fixed cells isolated on the filters of the ScreenCell® Cyto device were air-dried overnight at room temperature and then hydrated with tris-buffered saline (TBS; Dakocytomation, Glostrup, Denmark) containing 0.05% Tween 20. The antigens were retrieved with target retrieval solution pH 9 (ER1; Leica Biosystems, Wetzlar, Germany) at 95–99 °C for 20 min and rinsed with Bond Wash (Leica Biosystems). Isolated cells were treated for 5 min at room temperature with a peroxidase block solution (Leica Biosystems). Then, the samples were incubated for 30 min at room temperature with mouse anti-human Melan-A (Dako). A post-primary rabbit anti-mouse was then applied for 8 min followed by a polymer HRP anti-rabbit for an additional 8 min. A sequential incubation step with mouse anti-human CD45 antibody (Leica Biosystems) was applied for 30 min. Finally, a chromogenic staining using DAB-RED detection according to Leica Biosystems protocol and a counter-staining with Hematoxylin (DS9665, Leica Biosystems) for 10 min allowed the revelation of the antigen detection. After a final wash with distilled water, the ScreenCell® Cyto filter was mounted on a glass slide with the Faramount mounting medium (Agilent Technologies, Santa Clara, CA, USA), and covered with an 8 mm diameter coverslip.
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3

Immunohistochemical Analysis of FFPE Tissues

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FFPE blocks were sectioned (5 µm) for slides and then deparaffinized sequentially in xylene and ethanol. Antigen retrieval was performed in TRS (Target Retrieval Solution, High pH, Dako, Denmark) for 30 min steaming followed by 20 min at room temperature. The slides were incubated with 0.3% hydrogen peroxide in methanol to block endogenous peroxidases, rinsed with tris-buffered saline (TBS, Dako, Denmark) and incubated overnight at 4 °C with primary antibodies (Supplementary Table S1). Antibody detection was performed using mouse- and rabbit-specific HRP/DAB (ABC) secondary antibody detection kits (Abcam-ab64264) following the manufacturer’s protocol. All slides were counterstained with Mayer’s hematoxylin, mounted and scanned using (Aperio ScanScope XT 1509, AT2, Leica Biosystems, IL, USA) at 20(×) magnification.
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4

Immunohistochemical Analysis of JAK/STAT Signaling

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Immunohistochemical methods were used to evaluate expression of JAK3, STAT2, STAT4, and STAT6 in both lesional and perilesional skin and compared with healthy control skin. Paraffin-embedded tissue sections were mounted onto SuperFrost slides, deparaffinised, then treated in a solution of TRS, and transferred to distilled water. Endogenous peroxidase activity was blocked by 0,3% hydrogen peroxide in distilled water, and then sections were rinsed with Tris-buffered saline (TBS, Dako, Denmark) and incubated with primary rabbit polyclonal antibody against STAT2 (Santa Cruz Biotechnology Inc.), mouse monoclonal antibody against STAT4 (Santa Cruz Biotechnology Inc.), and primary rabbit polyclonal antibody against STAT6 (Santa Cruz Biotechnology Inc.) and incubated overnight with mouse monoclonal antibody against JAK3. Immunoreactive proteins were visualized using EnVision-horseradish peroxidase kit (Dako, Carpinteria, CA, USA) according to the instructions of the manufacturer. Visualisation was performed by incubating the sections in a solution of 3,3′-diaminobenzidine (DakoCytomation, Denmark). After washing, the sections were counterstained with hematoxylin and coverslipped. For each antibody and for each sample, a negative control was processed.
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5

Immunohistochemical Collagen Profiling

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Formalin-fixed tissues were sectioned and treated with proteinase K at 37°C for 60 min before washed three times with tris buffered saline (TBS, DAKO Cytomation). The sections were then treated with peroxidase block at 37°C for 10 min prior to incubation with antibody. Two antibodies were used, anti-type I and anti-type II collagen were diluted 1:150 with diluent (DAKO Cytomation) and applied to different sections for 40 min at 37°C. After washing with TBS, the sections were reacted with horseradish peroxidase (HRP) for 40 min at 37°C. After washing again with TBS, the signal was finally visualized as a brown reaction product from the peroxidase substrate 3,3′-diaminobenzidine (DAB).
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6

CD11c Immunohistochemical Staining

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Next, after buffering with TBS (DakoCytomation, Carpinteria, CA), the samples were treated for 1 h with the antibody (Rabbit Monoclonal Anti-CD11c IgG, BSB 6445, clone: EP 157 by BioSB®), at a dilution of 1: 100. Previously, the antibody was titrated on the fabricant’s recommended tissue (tonsil tissue). Diaminobenzidine (Catalog number BSB 0005, BioSB®) was employed as chromogen. No secondary antibodies were used for this process.
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7

Immunohistochemical Analysis of STAT Proteins

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Paraffin-embedded tissue sections were mounted onto Superfrost slides, deparaffinized, then treated in a solution of TRS (Target Retrieval Solution, Dako, Glostrup, Denmark) and transferred to distilled water. Endogenous peroxidase activity was blocked and then sections were rinsed with Tris-buffered saline (TBS, Dako, Glostrup, Denmark), and incubated with primary rabbit polyclonal antibody against STAT2 mouse monoclonal antibody against STAT4 (primary rabbit polyclonal antibody against STAT6 and incubated overnight with mouse monoclonal antibody against JAK3 (Santa Cruz biotechnology Inc, Dallas, TX, USA). Immunoreactive proteins were visualized using EnVision-horseradish peroxidase kit (Dako, Carpinteria, CA, USA). After washing, the sections were counter-stained with hematoxylin and cover slipped. For each antibody and for each sample a negative control were processed. The expression of STAT2, STAT4, and STAT6 are expected to be cytoplasmatic and nuclear upon activation.
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8

Immunofluorescent Characterization of Nerve Regeneration

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Expression of growth factors involved in nerve regeneration was assessed by monoclonal antibodies and immunofluorescence techniques. Freshly dissected nerve conduit from both the proximal and distal stump was suspended and snap-frozen in O.C.T. compound. Tissue slides were cut for 1 μm slides and fixed for 10 min in acetone. Next, the sections were rinsed in Tris Buffered Saline (TBS, Agilent Technologies, Inc., USA) and incubated with mouse antirat vWF, VEGF (Thermo Fischer Scientific, USA) and S-100 (Abcam, Inc., UK), rabbit antirat GFAP (Thermo Fisher Scientific, USA), Laminin B and NGF (Abcam, Inc., UK), and mouse anti-human HLA-1 and HLA-DR (Abcam, Inc., UK) monoclonal antibody for 30 min. Incubation using secondary antibodies was performed using goat anti-mouse or goat anti-rabbit IgG Cross-Absorbed Alexa Fluor 488 (Thermo Fischer Scientific, USA). PKH26 staining of hMSC prior to implantation assessed the presence of hMSC in the conduit. The slides were stained with DAPI and analyzed using a Leica DM 4000B Compound Microscope (Leica Microsystems, Germany) with a Qimaging Retiga 2000R Color Digital Camera (Teledyne Photometrics, USA) and digitalized and assessed using Image-Pro Plus, Ver 6.3.0.512 (Media Cybernetics, USA). Assessment of immunoreactivity was scored as follows: 0 = no staining; 1 = weak; 2 = moderate; and 3 = strong.
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9

Immunodetection of HIV Markers in Lymph Nodes

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For immunodetection of CD20, CD3, and p24, formalin-fixed and paraffin-embedded (FFPE) sections from human lymph nodes of HIV-infected patients were dewaxed and placed in decreasing ethanol concentrations. Heat-induced epitope retrieval was performed by autoclaving at 120 °C for 15 min in a citrate buffer pH 6 (Abcam). Then, the slides were permeabilized in 1X Tris-buffered saline (TBS) (Fisher scientific) with 0.1% Triton X-100 (Sigma-Aldrich) and 1% BSA (Sigma-Aldrich) for 10 min. Subsequently, blocking was added for 2 h with 1X TBS supplemented with 10% normal donkey serum (Jackson Immunoresearch) and 1% BSA. The slides were incubated with primary antibodies overnight at 4 °C: anti-CD20 (goat-polyclonal anti-CD20 antibody, 1/100, Abcam ab194970), anti-CD3 (mouse-monoclonal anti-CD3 antibody, 1/100, Leica Biosystems NCL-L-CD3-565), or anti-p24 (mouse-monoclonal anti-p24 antibody, 1/10, Dako-Agilent M0857), diluted in TBS 1 × −1% BSA. Next, samples were washed and incubated for 1 h with the appropriate secondary antibody: Alexa Fluor 546 donkey anti-goat (Invitrogen, 712-586-150) and Alexa Fluor 647 donkey anti-mouse (Invitrogen, A-31571), counterstained with DAPI (4′,6-diamidino-2-phenylindole-dilactate, ThermoFisher), and mounted with Fluoromount G (eBioscience).
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10

Collagen and Adhesion Molecule Expression in hMSCs Under Uniaxial Strain

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Membranes with hMSCs subjected to the uniaxial straining or in unstrained conditions were rinsed using PBS, followed by fixation process in methanol for 20 min. After rinsing using Tris-buffered saline (Dako, Denmark), peroxidase block was applied for 5 min to reduce nonspecific background signalling. Cells were then incubated with primary antibodies, which included rabbit anti-collagen type I, rabbit anti-collagen type II, or rat anti-collagen type III (Calbiochem-Daiichi Fine Chemical Co., Japan) diluted at 1 : 100 for 30 min. The cells were then incubated with streptavidin-peroxidase secondary antibody (Dako, Denmark) for 30 min. At last, the collagens in the cells were visualized by reaction with diaminobenzidine (Dako, Denmark).
For direct visualization of the adhesion molecules fibronectin matrix and N-cadherin, 4% paraformaldehyde was used to fixed cells and was permeabilized with −20°C acetone. Cells were then incubated with 1% bovine serum albumin to block nonspecific binding of antibodies, before being incubated with primary antibody, anti-fibronectin (Abcam, UK) diluted 1 : 300 for 1 h. The primary antibody was then detected by a secondary antibody specific to rabbit IgG (Abcam, UK) diluted 1 : 600 for 1 h. Hoechst staining was performed at the end of the staining process and examined under laser scanning confocal microscope (Leica TCS SP5 II, Germany).
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