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646 protocols using mitosox red mitochondrial superoxide indicator

1

Measuring Cellular and Mitochondrial ROS

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ROS was measured by means of the 2′,7′ –dichlorofluorescin diacetate (DCFDA)–Cellular Reactive Oxygen Species Detection Assay Kit (ab113851, Abcam, Cambridge, UK), according to the manufacturer’s protocol. SIRC cells were plated into 96-well black plates at a density of 1 × 104 cells/well for 24 h. After overnight growth, SIRC cells were grown in the control medium (CTRL), or in the presence of 10 nM NAP, or exposed to ultraviolet irradiation (UV-B) for 30 s with or without NAP for 24 h. Cells were washed gently in PBS twice and incubated with 25 μM DCFDA previously dissolved in a buffer solution for 45 min in the dark. The determination of the ROS concentration was performed by measuring the DCF fluorescence (λex = 495 nm, λem = 529 nm) with VarioskanTM. Twelve replicate wells were used for each group.
Mitochondrial-derived ROS (mtROS) detection was performed using the MitoSOX™ Red mitochondrial superoxide indicator (ThermoFisher Scientific, Milano, Italy). Cells were stained using 3 µM of the MitoSOX™ Red mitochondrial superoxide indicator (ThermoFisher Scientific, Milano, Italy). After incubation for 10 min at 37 °C, cells were washed three times and analyzed by MACSQuant Analyzer 10 (Miltenyi Biotec, Bologna, Italy).
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2

Intracellular Iron and ROS Quantification

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Intracellular iron concentration was measured using the Iron Assay kit (Sigma-Aldrich, MAK025) according to the manufacturer’s instructions. Total intracytoplasmic ROS as well as specific mitochondrial superoxide species were assessed by flow cytometry using the fluorescent probes 2′-7′- Dichlorodihydrofluorescein diacetate (CM-H2DCFDA; Thermo Fisher Scientific) and MitoSOX™ Red Mitochondrial Superoxide Indicator, respectively. For the quantification of mitochondrial superoxide levels, cells were cultured for 72 h and then incubated with 2 mM MitoSOX™ Red Mitochondrial Superoxide Indicator (Thermo Fisher Scientific) for 30 min at 37 °C. Intracellular ROS levels were instead assayed by staining the cells with 1.5 mM CM-H2DCFDA (Thermo Fisher Scientific) for 30 min at 37 °C. Fluorescence intensity was measured by flow cytometry using a FACS BD LSRFortessaTM X-20 cytofluorimeter (BD Biosciences, Bedford, MA, USA). The results were analyzed with FlowJo software (Tree Star, Inc., Williamson Way Ashland, OR 97520, USA). Three independent experiments were conducted.
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3

Mitochondrial ROS Detection in SNU-449 Cells

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The SNU-449 cells were treated with the control (unstained), control (stained with Mito SOX™ Red Mitochondrial Superoxide Indicator), DIC (25 µM), OXA (64 or 256 µM), co-treated with DIC (25 µM) and OXA (64 or 256 µM) for 24 h, and the ROS level in each sample was then detected by cell staining with Mito SOX™ Red Mitochondrial Superoxide Indicator (Invitrogen; Thermo Fisher Scientific, Inc.), according to the manufacturer's instructions. Positive cells containing a high level of ROS were detected by the BD Accuri™ C6 Plus personal flow cytometry (BD Biosciences).
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4

Mitochondrial Superoxide Visualization

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To monitor mitochondrial superoxide production, G3 MB cells were stained with the fluorescent dye MitoSOX Red mitochondrial superoxide indicator (Life Technologies) according to manufacturer’s instructions. 50 µg of MitoSOX reagent was dissolved in DMSO to prepare a 5 mM stock solution. Cells were suspended in Hanks Balanced Salt Solution (HBSS) with calcium and magnesium (Life Technologies) containing a final concentration of 5 µM of MitoSOX reagent and 1 µM of Hoechst 33342 nuclear counterstain. Cells were incubated in staining solution for 10 minutes at 37 °C. Following incubation, cells were washed and imaged using a Zeiss Axio Imager with Apoptome 2.
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5

Oxidative Stress Quantification in DLBCL

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Analyses of superoxide, hydrogen peroxide and reactive nitrogen levels were performed with IT-901 treated human DLBCL including Ly19, SU-DHL8, and TMD8 cells. Cells were treated in vitro with IT-901 (4μM) or control solution for 24 hours and the levels of superoxide, hydrogen peroxide and reactive nitrogen were determined by MitoSOX Red Mitochondrial Superoxide Indicator, Premo Cellular Hydrogen Peroxide Sensor, and DAF-FM Diacetate, respectively per manufacturer’s instructions (Life Technologies). The fluorescence intensities of cells after treatment were detected by flow cytomertry (LSR II, BD Bioscience).
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6

Visualizing Neutrophil Extracellular Traps

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Neutrophils, seeded in coverslips or coverslip chambers were stimulated for 90 minutes at 37 °C, fixed with 4% paraformaldehyde, permeabilized with 0.2% Triton X-100, followed by 0.5% gelatin for 20 minutes. Cells were stained with antibodies directed against neutrophil elastase (1:1,000, ab21595, Abcam), 8-OHG (1:250, ab62623, Abcam), complex V subunit d (1:250, catalog #459000, Life Technologies), Hoechst 33342 (1:1,000, Life Technologies), as well as secondary antibodies (1:500, Alexa 488 (A31570, A31572) or Alexa 555 (A21202, A21206) donkey anti-rabbit or anti-mouse antibodies, Life Technologies). After mounting (Prolong, Life Technologies), cells were visualized using a confocal LSM780 microscope. In additional experiments, NETs were stained in coverslip chambers using MitoSOX Red Mitochondrial Superoxide Indicator (5 µM), and Hoechst 33342 (1:1,000, all from Life Technologies). NETs were also visualized using fluorescence microscopy (EVOS cell imaging system, Life Technologies) quantifying MitoTracker (Life Technologies), TOM20 (Novus Biologicals, Littleton CO, clone 4F3), 8-OHdG (StressMarq Biosciences, clone 15A3) and DNA (DAPI or Sytox Green).
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7

Quantifying Cellular Oxidative Stress

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Total ROS and mitochondrial-dependent ROS using CM-H2DCFDA (1 μM) and MitoSOX Red Mitochondrial Superoxide Indicator (0.5 μM, Life Technologies) were evaluated by flow cytometry. Following SFN treatment and/or VSVΔ51 infection, cells were washed in PBS before incubation with the different probes for 30 min at 37°C. After incubation, cells were washed twice in PBS before fluorescence-activated cell sorting (FACS) analysis.
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8

Quantifying Mitochondrial Superoxide Levels

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The mito-ROS level was assessed using the MitoSOX™ Red mitochondrial superoxide indicator (Life Technologies, USA) according to the manufacturer's instructions. Briefly, after treatment, the cells were washed three times with PBS and incubated with 5 μM MitoSOX for 30 min in the dark. The level of mito-ROS was detected by a fluorescent microplate reader (Molecular Devices, Sunnyvale, CA) at 485 nm for excitation and 590 nm for emission [26 (link)].
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9

Resveratrol Modulates Mitochondrial Function

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Resveratrol was purchased from Aladdin (Shanghai, China). NAC (N-acetyl-L-cysteine) and Dimethyl sulfoxid (DMSO) were purchased from Sigma (St. Louis, MO, USA). The MDA assay kit, SOD activity assay kit, antioxidant capacity assay kit, glutathione peroxidase assay kit and glutathione reductase assay kit were obtained from Nanjing Jiancheng Bioengineering Institute (Nangjing, China). Dulbecco’s modified eagle medium (DMEM) and fetal bovine serum (FBS) were obtained from Gibco (St Louis, MO, USA). A cell counting kit (CCK-8) was purchased from Biosharp (Hefei, China). Annexin V-FITC/PI staining kit was purchased from BestBio (Shanghai, China). Anti-MnSOD antibody, anti-Sirt3 antibody, anti-LC3A/B antibody and anti-Beclin1 antibody were purchased from Abcam (Beverly, MA, USA). Alexa Fluor 488-conjugated secondary antibody and 4′,6′-diamidino-2-phenylindole (DPI) were purchased from BEIJING BIOSS (beijing, China). MitoSOX Red mitochondrial superoxide indicator and 5,5′,6,6′-Tetrachloro-1,1′,3,3′-tetraethyl-imidacarbocyanine iodide (JC-1) for live-cell imaging was obtained from life technologies (San Diego, CA, USA).
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10

Mitochondrial ROS Measurement in Cytokine-Treated Cells

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All the chemicals were from Sigma-Aldrich (St. Louis, MO) unless otherwise indicated. LPC (16:0) was purchased from Avanti Polar Lipids, Inc (#855675P; Alabaster, Alabama). Recombinant human IL-35 (#ALX-522-140-C010) was purchased from Enzo (Farmingdale, NY). Recombinant human IL-10 (#217-IL-005) and TGF-β (#240-B-002) were purchased from R&D systems (Minneapolis, MN). For mtROS measurement, MitoSOX Red Mitochondrial Superoxide Indicator (#M36008; Life technologies, Carlsbad, CA) was used.
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