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Dapi fluoromount g

Manufactured by Southern Biotech
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DAPI Fluoromount-G is a mounting medium designed for fluorescence microscopy. It contains the fluorescent dye 4',6-diamidino-2-phenylindole (DAPI), which binds to DNA and emits blue fluorescence when exposed to ultraviolet light. The medium is formulated to preserve the fluorescence signal and provide a suitable environment for microscopic analysis.

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637 protocols using dapi fluoromount g

1

Tissue Preparation for Electrophysiology and Histology

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For electrophysiology experiments, the tissue block containing the injection site was stored overnight in 10% neutral-buffered formalin at 4°C. After, it was transferred into 0.2% PBS Azide at 4°C until sectioning. The tissue block was mounted onto a stage and sectioned in 0.1M PBS at a thickness of 100μm using a VT-1000 vibratome (Leica). Slices were mounted onto microscope slides using DAPI Fluoromount-G (Southern Biotech #0100–20) and coverslipped before confocal imaging.
Following all behavioral experiments, mice were anesthetized with an intraperitoneal injection of Ketamine-Xylazine (120mg/kg Ketamine, 24 mg/kg Xylazine) and transcardially perfused with PBS followed by 10% neutral-buffered formalin. The brain was delicately extricated and stored in 10% neutral-buffered formalin overnight at 4°C. Tissue was mounted onto a stage and sectioned at 100μm using a VT-1000 vibratome (Leica). Sections were mounted and coverslipped using DAPI Fluoromount-G (Southern Biotech #0100–20). Confocal images were acquired using a LSM800 confocal laser scanning microscope (Zeiss) for injection site location verification, cannula placement, and viral expression in POm axons within pDLS and stereotypical POm-cortical projections in S1 L1 and L5a of all experimental mice.4 (link),25 (link),26 (link),47 (link),49 (link) All data were acquired using the Zen software suite (Zeiss).
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2

Immunofluorescence Assay for PML and APBs

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Cells were treated with AA or DMSO and fixed in 4% paraformaldehyde. Cells were then permeabilized in 0.5% Triton X-100 in phosphate-buffered saline (PBS) and blocked in 7.5% Goat Serum + 7.5% fetal bovine serum. The blocked cells were then incubated with anti-PML (1:100; Santa Cruz Biotechnology sc-966) overnight at 4° C. The next day, cells were washed with PBS and incubated with secondary antibody for 1h at room temperature. The slides were mounted with Dapi Fluoromount-G (Southern Biotech). Images were taken using the Leica DM 2500 microscope.
For the detection of APBs, the immuno-staining of telomeres was performed after the staining of PML protein described above, by fixation in 4% formaldehyde and dehydration with ethanol (50°–80°–100°). The dehydrated slides were overlaid with Cy3-(CCCTAA)3 PNA probe (Applied Biosystems) prepared in PNA hybridization solution (70% formamide - 10 mM Tris pH 7.2, BSA 1%), then incubated at 80° C for 3 min and hybridized at room temperature for 2 hours. The slides were washed twice in 70% formamide-10 mM Tris pH 7.2 and three times with 50 mM Tris pH 7.2–150 mM NaCl-0.05% Tween-20. Finally, the slides were mounted with Dapi Fluoromount-G (Southern Biotech). Images were taken using the Leica DM 2500 microscope.
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3

Lipid Droplet Staining Protocols

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Samples were treated with Oil Red O (Sigma, O0625) staining or Nile Red (Sigma, 19123) staining to detect LDs. For Oil Red O staining, samples were washed in 60% isopropanol for 5 min and then incubated with Oil Red O working solution (300 mg Oil Red O in 100 ml isopropanol, and 6:4 diluted with water) for 20 min at room temperature. After washing with 60% isopropanol for 1 min and H2O for 5 min, the slides were mounted with DAPI Fluoromount-G (SouthernBiotech, 0100-20) for imaging. For Nile Red Staining, slides were stained with Nile Red (Sigma, 19123) at 1 μg ml−1 for 10 min at room temperature, washed with PBS and mounted with DAPI Fluoromount-G (SouthernBiotech, 0100-20).
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4

Immunofluorescent Staining of ZIKV Envelope Protein

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To monitor ZIKV infection in cells, supernatant was removed at the indicated times and cells were rinsed in PBS. Cells were fixed in PBS–4% paraformaldehyde (Electron Microscopy Sciences, Hatfield, PA, USA) for 15 min at room temperature (RT), and permeabilized with PBS–0.1% Triton (Sigma) for 3 min at RT. Non-specific sites were blocked with PBS–1% bovine serum albumin (BSA, Sigma)–0.1% Tween 20 (Sigma) for 30 min at RT. ZIKV envelope protein (E) staining was performed using a primary mouse anti-flaviviral E antibody (4G2; home-purified from the ATCC hybridoma [30 (link)]) diluted in PBS–0.2% BSA–0.2% Tween 20 for 1 h at RT, and a secondary Alexa Fluor 488-coupled goat anti-mouse antibody (Life technologies) diluted in PBS–0.2% BSA for 30 min at RT. Finally, cells were mounted in Fluoromount G–DAPI (SouthernBiotech, Birmingham, AL, USA) and imaged on a fluorescence microscope (EVOS FL, Life Technologies). Cells were washed twice with PBS between each step.
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5

Fluorescent Enumeration of Circulating Tumor Cells

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Blood samples were filtered, fixed, permeabilized and washed, CTC identification by fluorescent enumeration was done as previously described6 (link), 17 (link). Filters were washed with PBS to remove unbound antibody, placed onto a microscope slide with Fluoromount-G/DAPI (Southern Biotech) and sealed with a glass cover slip. An Olympus BX54WI Fluorescent microscope with Carl Zeiss AxioCam was used to image the samples. Exposures were preset as 2–5 sec (Cyanine5), 2 sec (PE), 100–750 msec (FITC), and 10–50 msec (DAPI) for equal signal comparisons between cells. A Zen2011 Blue (Carl Zeiss) was used to process the images.
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6

Visualizing ZIKV Infection and Cell Junctions

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To assess ZIKV infection in cells, supernatant was removed at the indicated times and cells were rinsed in PBS. Then, cells were fixated in a 4% paraformaldehyde (PFA) solution for 15 min at RT and permeabilized with PBS – 0.2% Triton for 5 min at RT. Then, ZIKV envelope protein (E) staining was performed overnight at 4°C using a primary mouse anti-E antibody (4G2), and for 1 h at RT with a secondary Alexa Fluor 488-coupled goat anti-mouse antibody (Life technologies). Finally, cells were mounted in Fluoromount G – DAPI (SouthernBiotech) and imaged on a fluorescence microscope (EVOS FL, Life Technologies).
Presence of tight junctions in Caco-2 monolayers was assessed by zonula occludens-1 (ZO-1) immunostaining. Cells were fixed in PBS – 80% methanol (Sigma) for 15 min at RT and permeabilized with PBS – 0.2% Triton for 5 min at RT. Non-specific sites were blocked with PBS – 5% BSA for 30 min at RT. ZO-1 was stained by incubating cells with a polyclonal rabbit anti-ZO-1 (Invitrogen) overnight at 4°C as primary antibody, and an Alexa Fluor 546-coupled donkey anti-rabbit (Invitrogen) for 1 h at RT as secondary antibody, using the same buffers as previously (Hubert et al., 2019 (link)). Finally, cells were mounted in Fluoromount G – DAPI and imaged on the same fluorescence microscope as above. Cells were washed twice with PBS between each step.
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7

Assessing Cell Migration in Cardiomyoblasts

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As previously described, a cell migration assay on cardiomyoblast cell line (H9C2) was performed [3 (link)]. Briefly, a confluent monolayer of H9C2 cells (CRL-1446, ATCC, Manassas, VA, USA) was scratched with a 200 µL pipette tip, then the cells were washed in PBS and incubated with 5 × 108 EVs/mL in 1% EV-depleted (fetal bovine serum) FBS medium for 24 h, and PBS was used as negative control. The cell cultures were fixed in 4% formaldehyde and stained with Fluoromount g (DAPI, SouthernBiotech Birmingham, Al, USA). An EVOS cell imaging system (Thermo Fisher Scientific, Waltham, MA, USA) was used to take digital images of the stained cell cultures. ImageJ Freeware (imagej.nih.gov/version 1.8.0, National Institutes of Health, Bethesda, MD, USA) was used to quantify differences in the scratch areas between the experimental groups.
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8

CTC Immunophenotyping and Archiving

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The filtered and immunostained CTCs were further subtyped using additional immunomarkers. CTCs x/y placement on the filter was marked on the filter substrate and the cell placement was recorded using Zen2011 Blue software (Carl Zeiss). Samples were then archived and placed in storage at 4°C for ~2 years. Samples were removed from storage and PE fluorescence was photobleached by exposure to the excitation fluorescence (565 nm) for ~10 seconds. Samples were demounted and placed into a filter holder. Cells on filters were again permeabilized for 20 min at RT and restained using an antibody panel of CXCR4 and Vimentin, in the PE channel and eflour660 channel, respectively. Filters were washed, placed onto a microscope slide with Fluoromount-G/DAPI (Southern Biotech) and sealed with a glass cover slip. An Olympus BX54WI Fluorescent microscope with Carl Zeiss AxioCam was used to re-image all bleached CTC. Exposures were preset as 500 msec (efluor 660) and 2 sec (PE), and 10–50 msec (DAPI) for equal signal comparisons between cells. A Zen2011 Blue (Carl Zeiss) was used to process the images.
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9

Drosophila Larval Neuromuscular Junction Staining

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Third instar larvae were dissected in ice-cold 1xPBS and fillets were fixed in 4%PFA in PBS at room temperature for 30min. For Futsch staining, fillets were fixed in ice-cold methanol for 10min at −20°C. Samples were washed in 1xPBS for 10 min followed by two washes in 1xPBST (PBS + 0.1% Triton) for 10min each. Fillets were transferred to 0.5μl tubes for primary antibody incubation overnight at 4°C with agitation. After three 15 min washes in 1xPBST, samples were incubated in secondary antibodies for 1 h at room temperature. Samples were then washed three times for 10 min each and mounted with Fluoromount-G DAPI (SouthernBiotech) or SlowFade Glass Antifade Mountant (Invitrogen). Mouse anti-Dlg (4F3) 1:1000, anti-Futsch (22C10) 1:100, and anti Brp (nc82) 1:100 were obtained from Developmental Studies Hybridoma Bank (DSHB, University of Iowa). Rabbit anti- GluRIIC (1:5000) was a kind gift from Aaron DiAntonio. Alexa 647-conjugated goat anti-HRP was used at 1:200 (Jackson ImmunoResearch Laboratories, Inc., West Grove, PA). Goat anti-mouse Alexa 488 (Invitrogen) was used at 1:400 while goat anti-mouse TRITC and anti-rabbit FITC (Jackson ImmunoResearch Laboratories, Inc., West Grove, PA) were used at 1:400.
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10

Cryopreserved Brain Slice Staining

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Mice were perfused and brains were cryopreserved and 30–40 μm thick slices were prepared and stained as described previously [58 (link)]. Slices were mounted using Fluoromount G DAPI (Southern biotech).
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