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Ti2 e

Manufactured by Nikon
Sourced in Japan, United States

The Ti2-E is a Nikon microscope system designed for advanced cell biology applications. It features a motorized focus drive, multiple excitation/emission filter sets, and a sensitive CCD camera for high-resolution fluorescence imaging. The core function of the Ti2-E is to enable researchers to capture detailed, high-quality images of cellular structures and processes.

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108 protocols using ti2 e

1

Histological Analysis of Mouse Organs and Tumors

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Following 19 days of treatment, the mice were euthanized, and the heart, liver, spleen, lung, and kidney were removed and fixed in 10% paraformaldehyde, paraffin‐embedded, and sectioned (4 µm thickness). Fluorescence imaging was performed using an inverted fluorescence microscope (Nikon Ti2‐E) after H&E staining of the slices.
The tumor‐bearing mice were divided into six groups (n = 3) at random and the grouping was as above. After 2 days of treatment, one mouse in each group was euthanized, the tumors were removed, fixed in 10% paraformaldehyde, paraffin‐embedded, then sectioned (4 µm thickness). The slices were stained with H&E and imaged using a fluorescence microscope (Nikon Ti2‐E).
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2

High-Throughput Microfluidic Cell Migration Assay

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The microfluidic chips were imaged using an inverted microscope (Nikon Ti2-E). The brightfield and fluorescence images were taken with a 40x, 10x, or 4x objective lens and a monochrome CMOS camera (Hamamatsu ORCA-Fusion Gen-III SCMOS Camera). The field of view is around 14 mm2, which can cover 100 cell migration channels in an image. The outline of the device was fluorescently imaged by a DAPI filter set, transfected RFP cells were fluorescently imaged by a mCherry filter set, and Actin-GFP cells were imaged by a FITC filter set. Auto focusing was performed to ensure the image remained in focus throughout the imaging experiments. It takes less than 10 minutes to image a migration device that tests 32 conditions. The time-lapse experiments to monitor cell population dynamics were performed using a Tokai Hit stage top environment control on the Nikon Ti2-E microscope.
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3

Fluorescence Microscopy Apoptosis Necrosis Jurkat Cells

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Fluorescence microscopy was applied to portray apoptotic and necrotic changes in Jurkat T cells using AO/PI fluorescence staining.23 (link) The Jurkat T cells were cultured as described above. A total of 5 × 105 cells (based on the doubling time for the cell line) per 1 mL cell culture media were seeded into each well of a 6-well plate (Biologix, USA) and incubated for 24 h. The cells were then treated with the most active compound, positive control and negative control, followed by incubation for 24 h, 48 h or 72 h. The fluorescence dye containing AO (10 μg mL−1, 16 μL) and PI (10 μg mL−1, 13 μL) was prepared immediately prior to use. The treated cells, positive and negative controls containing dyes were examined immediately under an inverted UV-fluorescent microscope (Nikon Ti2-E, Japan) to prevent fluorescence dyes from fading. The images of viable cells and non-viable cells after treatment were taken by Nikon Ti2-E software. The observations were repeated in three independent experiments.
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4

Fluorescence Imaging of Lipid Vesicles

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The produced GVs were dropped (8 μL) on a microscope slide with a silicon imaging spacer (1 well, diam. × thickness 9 mm × 0.12 mm, Sigma–Aldrich, St. Louis, MO, USA), which were ultra-thin adhesive spacers peeled and stuck to slides to confine specimens without compression. The sample was then covered with a coverslip and left to stand for 10 min to allow the sediment of vesicles to travel to the bottom of the chamber by gravity. GV samples were observed with a Ti2-E inverted microscope (Nikon Ti2-E, Yokohama, Japan), and images were acquired using a confocal microscope (Nikon C2plus, Yokohama, Japan). The green fluorescence of calcein inside the GVs was excited by using a 488 nm laser with emission collected at 498–535 nm. Image analysis was performed using NIS-ELEMENTS C-ER software (Nikon, Yokohama, Japan).
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5

Immunofluorescence Staining of Glioma Cells

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Glioma cells were respectively positioned on glass coverslips (0.17 mm thickness, 14 mm diameter) in a 6-well plate at room temperature overnight. Then cells were washed by PBS, fixed by 4% paraformaldehyde for 30min, infiltrated by 0.1% Triton X-100 for 5min, and blocked by 2% bovine serum albumin (BSA) for 30min in sequence. Incubated with Specific primary antibodies: anti-SNAP25 (1:400; Rat# ab5666;Abcam), anti-GLS (1:400; Rat# ab156876;Abam), anti-MAP2 (1:400;Rat# ab5392; Abcam) at 4°C overnight and rinsed by PBS 3 times, fluorescent secondary antibodies (Donkey anti-Rabbit IgG (H+L) Highly Cross-Absorbed Secondary Antibody, Alexa Fluor 488 (Thermo Fisher Scientific, catalog# A-21206, RRID AB_2535792) were applied to specimens and incubated at 37°C in the darkness for 1h. Mounting medium with DAPI DNA counterstain was applied to the specimens followed by images capture (Nikon, Ti2-E).
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6

Histological Analysis of Osteoarthritis

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Human cartilage tissues were fixed in 4% paraformaldehyde, embedded in paraffin, and made in sections. Mouse knee joints were fixed in 4% paraformaldehyde, decalcified in 0.5 µM EDTA, and embedded in paraffin. For Safranin-O and fast green staining, all sections were deparaffinized in xylene, hydrated with graded ethanol, and stained with Safranin-O and fast green (Sigma). Cartilage destruction, synovitis, and osteophyte formation were scored by three observe under blinded conditions using the OARSI (grade 0–6), synovitis (grade 0–3), and osteophyte (grade 0–3) scoring system. The OARSI, synovitis, and osteophyte scores are presented as the mean of the maximum score in each mouse, and each representative Safranin-O-stained image was selected from the most advanced lesion among serial sections. For immunohistochemistry, the slides were treated with EDTA repair solution in a boiling water bath for 30 min, and blocked in 5% BSA (MCE) for 1 h. Primary antibodies against MMP3 (1:100; Abcam, ab52915), MMP13 (1:100; Proteintech, 18165-1-AP), NFKB1 (Proteintech, 14220-1-AP), and p-p65 (Cell Signaling, 3033) were added into the slides at 4 °C overnight. The next day, the slides were washed with PBS thrice and incubated with secondary fluorescence antibodies for 1 h at room temperature. DAPI was used to stain the nuclei. Nikon Ti2-E was used to acquire the fluorescence images.
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7

Colocalization of mMeg and Rab11 in LLC-PK1 cells

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LLC-PK1 cells were grown in glass coverslips for 24 h, then, co-transfected with plasmids encoding the chaperone RAP and mMeg using Lipofectamin 2000. For the colocalization experiments wild-type mMeg, mMeg S/D or mMeg S/A were used. To visualize Rab11 the receptor was co-transfected with mCherry -Rab11. After 24 h of expression, cells were treated with 50 μM YU142670 or vehicle for 4 h. Cells were fixed with 4% paraformaldehyde in PBS and then permeabilized with 0.2% Triton X-100 in PBS. Next, the cells were blocked with 5% BSA in PBS and incubated successively with the primary antibodies (anti-HA and anti-EEA1 or anti-Rab7) and the corresponding secondary antibodies. Images were captured by Inverted Nikon Ti2-E and deconvolved with DeconvolutionLab (Sage et al., 2017 (link)) Manders coefficient was calculated with JaCoP (Bolte and Cordelières, 2006 (link)), a plugin for ImageJ (NIH). Briefly, images of cells with the two stains were selected and separated. Cells were analyzed with the JaCoP function of Manders’ Coefficient and data was stored for analysis.
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8

Visualizing BMAL1 and HRD1 interactions

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HEK293 cells transfected with EGFP-BMAL1 and FLAG-HRD1 were washed with PBS twice and fixed with 4% paraformaldehyde for 10 min at room temperature. After treatment with 0.25% Triton X-100 for 15 min, the cells were blocked with 4% FBS (Gibco; Thermo Fisher Scientific, Inc.) for 1 h at room temperature. Cells were washed with PBS and incubated with anti-FLAG antibody (Sigma-Aldrich; Merck KGaA; cat. no. F9291; 1:1,000) or GFP antibody (Santa Cruz Biotechnology, Inc.; cat. no. (B-2):SC-9996; 1:1,000) in PBS overnight at 4˚C. Next, the cells were incubated with Alexa Fluor 594 donkey anti-mouse secondary antibodies (Thermo Fisher Scientific, Inc.; cat. no. A32744; 1:300) for 2 h and then the nuclei were stained with DAPI (Sigma-Aldrich; Merck KGaA; cat. no. D9542; 2 µg/ml) for 10 min. Finally, the cells were observed with an inverted system microscope Ti2-E (Nikon, Japan).
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9

Immunofluorescence Assay of Chondrocyte Markers

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Normally, P2 human primary chondrocytes were selected for this experiment. Briefly, the sterile cell plate is carefully put into the 24-well plate, and human chondrocytes were seeded on sterile glass coverslips at the cell density of 3 × 104 per well. When cells were treated with relevant stimulation, growth medium was aspirated and 4% paraformaldehyde was added to fix the cells for 20 min at room temperature. After washes with PBS, 0.2% Triton X-100 was added for 5 min at room temperature to permeabilize the cells, followed by 5% BSA for blocking for 30 min. Primary antibody (1:200) against ENO1 (Proteintech, 11204-1-AP), Aggrecan (Proteintech, 13880-1-AP) and Collagen II (Abcam, ab34712) was added to incubate with the cells overnight at 4 °C. After cells were washed, fluorescent Alexa Fluor® 555-conjugated anti-rabbit IgG (1:500; Cell Signaling, 4413) was used to incubate for 1 h in dark at room temperature. The cell nuclei was stained by 4′, 6-diamidino-2-phenylindole (DAPI). Images were obtained using Nikon Ti2-E at wavelengths of 555 nm (red) and 405 nm (blue, DAPI).
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10

Immunohistochemical Analysis of CD163 and iNOS

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Immuno-histochemical assays were used to determine CD163 and iNOS protein expression in the bladder tissue of rats. Tissues were obtained from rats with/without HPP treatment, fixed in 10% formaldehyde for 24 h, and then embedded in paraffin. The specimens were cut into 5-μm sections and roasted at 60°C for 2 h. Antigenic retrieval was performed in citric acid buffer (pH = 6.0) followed by washing with PBS and treatment with 3% H2O2 and 5% bovine serum albumin. Afterward, the sections were incubated with primary antibodies against CD163 and iNOS (dilutions of 1:50; Cell Signaling Technology) at 4°C overnight. Subsequently, they were incubated with secondary antibody for 30 min. Detection was performed using 3,3′-diaminobenzidine (DAB) chromogen (Maixin Biotech. Co. Ltd, Fuzhou, China), and the sections were counterstained with hematoxylin, dehydrated through graded alcohols, and cleared in xylene. Finally, pictures were taken under 200× magnification under a microscope (Ti2-E; Nikon). Immunostaining was evaluated by Image-Pro Plus 6.0 image analysis software (Media Cybernetics, Inc., Silver Spring, MD, USA).
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