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Mirin is a type of laboratory equipment used for the purification and separation of biological samples. It functions as a centrifuge, utilizing high-speed rotation to separate components within a sample based on their different densities. The Mirin device is designed to handle a variety of sample types, including cells, proteins, and other macromolecules.

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3 protocols using mirin

1

Cellular Response to DNA Damage

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Unless otherwise stated, doxorubicin (Sigma) was used at 0.5 μg/ml, etoposide (Sigma) at 30 μg/ml, hydroxyurea (Sigma) at 2 mM, aphidicolin (Sigma) at 1 μM, KU-55933 (Calbiochem) at 10 μM, AZ20 (ApexBio) at 3 µM, bleomycin (Sigma) at 10 μM, and Mirin (Santa Cruz Biotechnology) at 20 µM.
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2

Cytogenetic Assays Using Chemical Inhibitors

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Colcemid (L-6221, Biochrom AG) was used at 0.1 μg/ml to accumulate cells at metaphase (Stock: 10 μg/ml in phosphate-buffered saline (PBS) w/o Ca++, Mg++). Calyculin A (C-3987, LC laboratories) was used at a concentration of 50–100 nM (Stock: 10 μM in DMSO; dimethyl sulfoxide) for induction of premature chromosome condensation (PCC) during the G2-phase of the cell cycle. Carnoy's fixative was prepared by mixing 3 parts methanol (Sigma Aldrich) and 1 part glacial acetic acid (Carl Roth GmbH & Co.) just before use. A total of 2.5 ml of ready-to-use Giemsa stain (Carl Roth GmbH & Co.) was diluted in 50 ml of Sorenson's buffer (10582–013, Gibco, Invitrogen) to stain metaphase chromosomes, or PCCs. Entellan (Merck) was used as mounting medium.
The Parp-1 inhibitor PJ34 (Calbiochem) was used at 5 μM final concentration. 8-(4-Dibenzothienyl)-2-(4-morpholinyl)-4H-1-benzopyran-4-one (NU7441, Tocris), a DNA-PKcs inhibitor, was dissolved in DMSO at 10 mM and was used at 5 μM final concentration. L82 (Lig1 inhibitor) and L67 (Lig1 and Lig3 inhibitor) (36 (link)) were purchased from Specs (The Netherlands) and used at 100 μM final concentration. Mirin (sc-203144, Santa Cruz Biotechnology Inc., Chemistry Department of Indianapolis University) was used at 300 and 500 μM for translocation and DSB end resection assays, respectively.
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3

Inhibitors of DNA Repair Pathways

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DNA2 inhibitor (NIH, Developmental Therapeutics Program, Cat# NSC-105808) was dissolved in dimethylsulfoxid (DMSO) at 10 mM and used at a final concentration of 4 µM. Mirin, an MRE11 inhibitor (2-amino-5-[(4-hydroxyphenyl) methylene]-4(5H)-thiazolone, Santa Cruz Biotechnology) was dissolved in DMSO at 100 mM and was used at 75 µM final concentration. PFM01, a specific inhibitor of MRE11 endonuclease function ((5Z)-5-[(4-Hydroxyphenyl) methylene]-3-(2-methylpropyl)-2-thioxo-4-thiazolidinone, Tocris) was dissolved in DMSO at a 50 mM concentration and was used at a final concentration of 10 μM. In the experiments presented here these two MRE11 inhibitors were used in combination. NU7441 (8-(4-Dibenzothienyl)-2-(4-morpholinyl)-4H-1-benzopyran-4-one, Selleckchem), a specific DNA-PKcs inhibitor was dissolved in DMSO at a final concentration of 10 mM and was used at a working concentration of 10 µM. Unless indicated otherwise, all inhibitors were added to the cell cultures 1 h before irradiation and were maintained until collecting cells for analysis.
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