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18 protocols using antibiotic antimycotic mixture

1

Generation and Characterization of HD Mouse Models

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YAC128 HD mice and WT littermates were obtained from The Jackson Laboratory (Bar Harbor, ME, USA; JAX Mice #004938, FVBN/J background). Additionally, for the assessment of fibroblast reprogramming, we generated a crossbreed of YAC128 and Oct-eGFP mice (Lengner et al., 2007 (link)) (JAX Mice #008214, B6;129S4/SvJae background). The cultured mouse adult fibroblasts were derived from back-skin biopsies of 8- to 10-week-old mice. Briefly, the skin fibroblasts were cultured using the explant technique in HEPES-buffered DMEM (Sigma-Aldrich, St Louis, MO, USA) supplemented with 10% FBS originating from New Zealand (Sigma-Aldrich), 2 mM L-Gln (Sigma-Aldrich), 1× antibiotic-antimycotic mixture (Sigma-Aldrich) and 10 μg/ml L-ascorbic acid (Sigma-Aldrich). Human HD fibroblasts, line GM04281, were obtained from Coriell (Coriell Cell Repository, Camden, NJ, USA). The protocols for the maintenance and handling of the animals were approved and monitored by the Local Ethical Commission for Animal Experiments in Poznan.
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2

Characterization of Attenuated Virus Strain

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Vero cells (African green monkey kidney cells; National Centre for Cell Sciences, Pune, India) and U-87 MG cells (ATCC- HTB14; American Type Culture collection) were grown in DMEM (Dulbecco’s modified Eagle’s medium; Gibco, Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 10% heat-inactivated fetal bovine serum (FBS) and 1× antibiotic-antimycotic mixture (all from Sigma-Aldrich, Bangalore, India). Cultures were incubated at 37 °C in a humidified atmosphere containing 5% CO2.
The virus strain used, a 2008 human isolate from Kerala, India, designated as RGCB 355/KL08, was described earlier [85 (link)]. It was passaged four times in Vero cells and was designated as RGCB 355/KL08-p4 (p4). RGCB 355/KL08-p4 was further used to infect U-87MG cells and was passaged 75 times to produce the attenuated strain designated as RGCB 355/KL08-p75 (p75). The replication kinetics of the virus stocks (p4 and p75) in U-87 MG cells were assessed on Vero cell monolayers by plaque assay as previously described [85 (link)].
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3

Isolation of Murine Peritoneal Macrophages

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Macrophages were isolated sterile RPMI 1640 medium containing 1% FBS and antibiotic-antimycotic mixture (Sigma) from peritoneal lavage from mice as described earlier43 (link)44 (link)45 (link). Cells were washed gently thrice with RPMI 1640 medium at 4 °C. Cells were maintained at 37 °C in a humidified incubator containing 5% CO2. Cells were plated in same medium and after 1 h, non-adherent cells were removed by washing.
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4

Gold Nanoparticle Cytotoxicity Assay

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All chemicals used were of analytical
grade or of highest purity available and used as received. Hydrogen
tetrachloroaurate(III) hydrate (HAuCl4·3H2O), tetrasodium salt of meso-tetrakis(4-sulfonatophenyl)porphyrin
(C44H26N4Na4O12S4·xH2O), HEPES buffer,
antibiotic–antimycotic mixture, annexin V, and propidium iodide
(PI) matrigel were from Sigma-Aldrich. Sodium hydroxide (NaOH) and
sodium borohydride (NaBH4) were from Merck Millipore. The
glassware was carefully cleaned with aqua regia (3:1 HCl/HNO3) and then rinsed several times with HPLC water prior to use under
sonication. HPLC water was used to prepare all of the solutions. Iscove’s
modified Dulbecco’s medium (IMDM), fetal bovine serum (FBS),
Super Signal West Pico imaging system, and CellMask Deep Red Plasma
membrane Stain were from Thermo Fisher Scientific. All of the antibodies
were from Cell Signaling Technology. Protease and phosphatase inhibitor
cocktails were from Calbiochem. Cell cultures insert and flasks were
from BD Bioscience.
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5

Schistosoma Worm Culture and Imatinib Treatment

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Perfusion was done with M199 medium (Gibco). Paired adult worms were collected using fine tweezers and washed with M199 medium (2x). Subsequently, they were maintained in culture in M199 supplemented with FCS (Gibco; 10%), HEPES (Sigma; 1 M, 1%), and antibiotic/antimycotic mixture (Sigma; 1%) at 37°C and 5% CO2[36] (link), [38] (link). Inhibitor treatment was performed for 24 h or 48 h with 50 µM Imatinib (Imatinib mesylate, C29H31N7O·CH3SO3H, dissolved in water; Enzo Life Sciences) as previously described [38] (link). Control couples were kept in culture for 24 h or 48 h without inhibitor addition but otherwise treated using the same conditions. During the treatment periods, pairing stability and vitality were checked regularly. We defined pairing stability of couples when males kept their female partners within the gynecophoral canal while being sucked with their ventral suckers to the Petri dish. When couples separated, or when males stopped sucking to the Petri dish and/or lay on the side (a sign of decreasing vitality), the appropriate worms were not used for experiments and removed. After completion of treatment, the couples (inhibitor-treated and control) were carefully separated using featherweight tweezers, immediately shock-frozen in liquid nitrogen, and stored at −80°C.
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6

Culturing RTgill-W1 Cell Line

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A detailed description of the method used for the gill cell line culturing is provided by Mardones et al. [28 (link)]. The RTgill-W1 cell line (CRL-2523) was acquired from the American Type Culture Collection (ATCC, Manassas, VA, USA). The cell line was maintained in the dark at 19 °C in 25 cm2 culture-treated flasks containing Leibovitz’s L-15 medium (Sigma, St. Louis, MO, USA, L1518) supplemented with an antibiotic–antimycotic mixture (Sigma, A5955, St. Louis, MO, USA), comprising penicillin (10,000 units mL−1), amphotericin B (25 mg mL−1) and streptomycin (10 mg mL−1), and 10% (v/v) fetal bovine serum (FBS) (Sigma, 12003C, St. Louis, MO, USA). For sub-culturing twice per week, TrypLE™ Express (Gibco™, Billings, MT, USA) solution was used to detach the cells from the bottom of the flasks, and L-15 medium was added at a ratio of 1:2.
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7

Cell Culture Media Preparation

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Hank’s balanced salt solution (HBSS) and 0.05% trypsin were purchased from Mediatech (Washington, DC). Fetal bovine serum (FBS) was obtained from Atlas Biologicals (Fort Collins, CO). Antibiotic-antimycotic mixture was obtained from Sigma-Aldrich (St. Louis, MO).
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8

Antitubulin Compounds Cytotoxicity Evaluation

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All cell lines were
obtained from ATCC (American Type Culture Collection,
Manassas, VA, USA), while cell culture supplies were purchased from
Cellgro Mediatech (Herndon, VA, USA). We examined the antiproliferative
activity of our antitubulin compounds in four human prostate cancer
cell lines (LNCaP, DU 145, PC-3, and PPC-1) and three melanoma cell
lines (A375, B16-F1, and WM-164). All prostate cancer cell lines were
cultured in RPMI 1640, supplemented with 10% fetal bovine serum (FBS).
Melanoma cells were cultured in DMEM, supplemented with 5% FBS, 1%
antibiotic/antimycotic mixture (Sigma-Aldrich, Inc., St. Louis, MO,
USA), and bovine insulin (5 μg/mL; Sigma-Aldrich). The cytotoxic
potential of the antitubulin compounds was evaluated using the sulforhodamine
B (SRB) assay after 96 h of treatment.
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9

Cell Culture Media Preparation

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DMEM/F-12 50/50 1x, Hank’s balanced salt solution (HBSS) and 0.05% trypsin were purchased from Mediatech (Washington, DC). Fetal bovine serum (FBS) was obtained from Atlas Biologicals (Fort Collins, CO). Antibiotic-antimycotic mixture and cinnamic acid were obtained from Sigma.
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10

Gastric Epithelial Cell Culture and Treatment

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Gastric epithelial cultures were generated as previously described (Duckworth et al., 2015a (link)) and were maintained in 12-well tissue culture plates on glass cover slips (Appleton Woods, Selly Oak, UK) that contained 1.0 mL/well DMEM-Ham’s F-12 mix (Sigma–Aldrich), 10% fetal calf serum (Invitrogen, Paisley, UK), 1.25% L-glutamine (Sigma–Aldrich), and 1% antibiotic/antimycotic mixture (Sigma–Aldrich). Following digestion and plating, glands were maintained at 37°C in a humidified environment containing 5% CO2 for 24 h. Media was changed to fresh complete media after a further 24 h. Forty-eight hours after initial plating, cells were treated with HECb, brasiliensic and isobrasiliensic acids (12.5 to 100 μg/mL) for 24 h, 2 h before fixation EdU was added to the culture media. Cells were fixed in 2% formaldehyde for 30 min followed by three washes in PBS. Treatments were repeated a minimum of four times using glands extracted from a different mouse on each occasion.
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