The largest database of trusted experimental protocols

15 protocols using ab51772

1

Protein Expression Analysis of MSC-MG63 Co-culture

Check if the same lab product or an alternative is used in the 5 most similar protocols
After different proportions of MSC and MG63 were co-cultured to a predetermined time, the supernatant of the upper and lower chambers of the 6-well cell culture plate was aspirated, and cells were cleaned twice with PBS. A protein extraction kit (SD-001, Invent Biotechnologies, Inc, China) was used for protein extraction. Lysis buffer was added and spilled on the ice for 5 min. Then, the protein lysate was filtered through a centrifugal column and placed into a centrifuge for 10 minutes under the condition of 10000 rpm and 4°C, and the clear fluid in the collection tube is the protein. NanoDrop 2000 was used to measure protein concentration. After that, the protein was prepared with a 5x loading buffer in proportion, and the sample was performed using publishing protocols [16 (link), 17 (link)] with antibodies directed against α-smooth muscle actin (α-SMA, ab5694, Abcam, Cambridge, UK), E-cadherin (ab212059, Abcam), N-cadherin (AF4039, Affinity), Slug (ab51772, Abcam), Snail (ab216347, Abcam), and Vimentin (ab92547, Abcam); the dilution of these antibodies was 1 : 1000, and β-actin (ab8227, Abcam) and GAPDH (ab9485, Abcam) ratio of these two antibodies was 1 : 100000.
+ Open protocol
+ Expand
2

Protein Extraction and Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
The protocols used for cellular protein extraction and Western blotting were the same as those previously described [27 (link)]. Western blotting was performed with a polyclonal anti-HOXC10 antibody (1:1000 dilution; ab153904; Abcam) and a polyclonal anti-Slug antibody (1:1000 dilution; ab51772; Abcam). GAPDH (antibody: 1:1000 dilution; 2118; Cell Signaling) was used as the internal control protein.
+ Open protocol
+ Expand
3

Protein Expression Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
RIPA lysis buffer (PC101, EpiZyme, Shanghai, China) was used to extract the proteins from cells. Protein concentrations were determined using a bicinchoninic acid assay reagent kit (Beyotime, Shanghai, China). Protein lysates were separated using 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and subsequently transferred onto a polyvinylidene fluoride (PVDF, WJ002, EpiZyme) membrane. The PVDF membrane was blocked with 5% skimmed milk at 25°C for 2 h followed by overnight incubation with primary antibodies (anti-FTO, 1:1000, Abcam, USA, ab92821; anti-GAPDH, 1:1000, Abcam, USA, ab8245; anti-CTNNB1 1:1000;8480S; Cell Signaling Technology, USA, anti-slug 1:2000, Abcam, USA, ab51772; anti-ZEB1, 1:500, Abcam, USA, ab203829; anti-SOX2, 1:500, Abcam, USA, ab92494) at 4°C. The membrane was then incubated with secondary antibodies at 25°C for 2 h and binding signals were detected using an enhanced chemiluminescent kit (Beyotime, China). Afterwards, a multi-imaging system (Tanon 5200, Tanon Science & Technology Inc., Shanghai, China) was used for image acquisition and ImageJ program was used for data quantification.
+ Open protocol
+ Expand
4

Evaluating VEGFR2 Signaling Pathway

Check if the same lab product or an alternative is used in the 5 most similar protocols
After cells treated with/without 100 ng/ml rhVEGF, 100 nM apatinib or 100 ng/ml rhVEGF + 100 nM apatinib, cells were lysed using lysis buffer (Cell Signaling Technology, Danvers, USA) to extract total protein. Protein lysates were separated by 10% SDS-PAGE, followed by transfer to nitrocellulose membranes. The membrane was then blocked with 5% milk diluted in PBS at room temperature for 1 h, followed by incubated with 1:1000 VEGFR2 antibody (ab10972, Abcam, Cambridge, MA, USA),1:5000 p-VEGFR2 (ab38473, Abcam), 1:2000 p-MEK (2338, CST), 1:1000 MEK (4694, CST), 1:2000 p-ERK1/2 (4370, CST), 1:1000 ERK (4695, CST), 1:2000 slug (ab51772, Abcam), 1:3000 Snail (ab53519, Abcam), 1:2500 MMP9 (ab38898, Abcam), 1:1500 P-AKT (ab81283, Abcam), 1:1500 AKT (ab179463, Abcam) and 1:5000 GAPDH antibody (ab8245, Abcam) overnight at 4 °C separately. Once primary antibodies were washed, membrane was incubated with goat anti-rabbit horseradish peroxidase-labeled secondary antibody (Sangon Biotech, Shanghai, China). Protein bands were detected by incubating the membrane with Western Bright enhanced chemiluminescence working solution (Advansta, Menlo Park, CA, USA). The film (Kodak XBT-1, Carestream, Xiamen, China) was scanned with Bio-rad Gel Doc XR+ (BIO-RAD, Shanghai, China).
+ Open protocol
+ Expand
5

DHA and IL-6 Signaling in EMT

Check if the same lab product or an alternative is used in the 5 most similar protocols
DHA was purchased from MedChemExpress and dissolved in dimethyl sulfoxide. Recombinant IL-6 protein was purchased from Abcam (ab208325; Cambridge, UK). Primary antibodies against E-cadherin (1:1000; ab40772; Abcam), SLUG (1:1000; ab51772; Abcam), Snail (1:1000; ab216347; Abcam), signal transducer and activator of transcription 3 (STAT3, 1:1000; ab68153; Abcam), phosphorylated (p)-STAT3 (Ser727; 1:1000; ab32143; Abcam), β-catenin (1:1000; ab32572; Abcam), and GAPDH (1:1000; ab8245; Abcam) were employed in this research.
+ Open protocol
+ Expand
6

Western Blot Analysis of Oncogenic Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
OSCC cell protein was harvested by ice-cold RIPA lysis solution, and protein concentration was determined by the Pierce™ BCA Protein Assay Kit (Thermo Fisher Scientific, Waltham, USA). The protein was separated by SDS-polyacrylamide gel electrophoresis and then transferred to polyvinylidene fluoride (PVDF) membrane by wet transfer method. Finally, the protein bands were sequentially probed with primary and HRP-conjugated secondary antibodies, after which protein-antibody complex was visualized by enhanced chemiluminescence (ECL) reagent.
Antibodies for GAPDH (ab9485, Abcam, Cambridge, UK), SNAIL (ab216347, Abcam), and SLUG (ab51772, Abcam) were purchased from Abcam. Antibodies for TAB2 (14410-1-AP, Proteintech, Rosemont, USA), PI3K (20584-1-AP, Proteintech), and AKT (60203-2-Ig, Proteintech) were purchased from Proteintech. Antibodies for Caspase-3 (9662s, Cell Signaling Technology, Boston, USA), Caspase-8 (4790S, Cell Signaling Technology), Caspase-9 (9504S, Cell Signaling Technology) were purchased from Cell Signaling Technology.
+ Open protocol
+ Expand
7

Protein Expression Analysis in HPAEpiCs and Lung Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total proteins were extracted from HPAEpiCs or lung tissues by using lysis buffer (P0013G, Beyotime, China), and the protein concentration in each extract was determined using a Bradford protein assay kit (ab102535, Abcam, Cambridge, UK. Next, a 20 ug sample of total protein from each extract was separated by SDS-PAGE (10%; Beyotime), and the protein bands were transferred onto PVDF membranes (Millipore, Billerica, MA, USA), which were subsequently incubated overnight at 4°C with the following antibodies: anti-LC3B (1 : 1000, ab51520, Abcam, Cambridge, MA, USA), P62 (1 : 1000, ab91526, Abcam), Beclin-1 (1 : 1000, ab207612, Abcam), SLUG (1 : 1000, ab51772, Abcam), HIF-1α (1 : 500, ab92498, Abcam), E-cadherin (1 : 500, ab40772, Abcam), N-cadherin (1 : 1000, ab202030, Abcam), and GAPDH (1 : 10000, ab8245, Abcam). Next, the membranes were incubated with an HRP goat anti-rabbit/mouse IgG secondary antibody (1 : 20000, ab8245, Abcam); after which, the immunostained protein bands were detected using an enhanced chemiluminescence detection system (Millipore). The integral optical density values of the protein bands were analyzed using Image Pro Plus 6.0 software.
+ Open protocol
+ Expand
8

Western Blot Analysis of EMT Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from cells which were lysed by RIPA lysis buffer containing protease inhibitors. The total protein were quantified and then separated by 12% SDS-PAGE. After moving proteins to PVDF membranes, 5% fat-free milk was employed to seal the membranes, which were further cultured with the corresponding primary antibodies and secondary antibodies. Antibodies against ZNF217 (ab136678, 1:2000), E-cadherin (ab40772, 1:10,000), N-cadherin (ab202030, 1:2000), Vimentin (ab193555, 1:2000), Slug (ab51772, 1:1000), Twist (ab187008, 1:2000) and GAPDH (ab8245, 1:10,000) were all from Abcam (Cambridge, UK). GAPDH served as internal control. Furthermore, protein bands were detected by chemiluminescence detection system.
+ Open protocol
+ Expand
9

Western Blot Analysis of EMT Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from EC109 and KYSE-150 cells using RIPA lysis buffer (Sigma, USA). Total protein (50 µg per sample) is separated on a 10% SDS-PAGE gel and transferred onto a polyvinylidene difluoride membrane. Membranes were blocked with 5% non-fat milk for 2 hours and incubated with primary antibodies anti-GAPDH (1:1,000, ab181602, Abcam, UK), anti-Slug (1:1,000, ab51772, Abcam, UK), anti-Vimentin (1:1,000, ab92547, Abcam, UK), or anti-E-cadherin (1:1,000, ab40772, Abcam, UK) at 4 °C overnight. After washing three times, the membranes were incubated with a peroxidase-labeled secondary antibody (anti-rabbit IgG, 1:2,000, ab6721, Abcam, UK) for 2 hours. Enhanced chemiluminescence (ECL) (ThermoFisher, USA) was used to visualize protein bands followed by analysis with Image Lab Software (Bio-Rad, USA).
+ Open protocol
+ Expand
10

Protein Expression Analysis in Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells in each group were lysed with RIPA lysate (1 mL RIPA + 10μL PMSF + 10μL aprotinin) for 30 min and operated on ice. Protein concentration was measured by BCA method, and loading buffer was added to denatured protein. Prepare 10% SDS-PAGE and add 20 μg protein sample to each well. Use wet transfer to transfer to PVDF membrane. 5% skimmed milk powder was closed for 2 h. Primary antibody of PAR2 (ab180953, Abcam, Cambridge, MA, USA), Oct4 (ab200834), SOX2 (ab171380), Nanog (ab109250), Snail1 (ab31787), Slug (ab51772)), Twist1 (ab50887)), E-cadherin (ab40772), Vimentin (ab92547) was diluted at 1: 1000 TBST at 4 ℃ overnight. The 1: 5000 diluted secondary antibody was added and incubated for 2 h at room temperature. ECL luminescence kit was developed and analyzed after fixing.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!