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Ultraflex 3 instrument

Manufactured by Bruker
Sourced in Germany

The Ultraflex III is a high-performance mass spectrometry instrument from Bruker. It is designed for the analysis of a wide range of samples, including proteins, peptides, and small molecules. The Ultraflex III utilizes matrix-assisted laser desorption/ionization (MALDI) technology to generate ions from the sample, which are then detected and analyzed by the instrument's time-of-flight (TOF) mass analyzer.

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3 protocols using ultraflex 3 instrument

1

MALDI-TOF MS Characterization of Purified MTs

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MTs were purified by using FPLC according to our previous study [44 (link)]. After isolation, MTs were analyzed using MALDI-TOF MS (Ultraflex III instrument, Bruker Daltonik, Leipzig, Germany) equipped with a laser, operating at wavelength of 355 nm with an accelerating voltage of 25 kV, a maximum energy of 43.2 µJ, and a repetition rate of 2000 Hz. The matrixes used for analyses were α-cyano-4-hydroxycinnamic acid (HCCA) and 2,5-dihydroxybenzoic acid (DHB) (Bruker Daltonik, Leipzig, Germany) prepared in acetonitrile solution (30% w/w) with the addition of trifluoroacetic acid (0.1% w/w). Matrix and substance solutions for analysis were mixed in ratio of 1:1 (v/v). Obtained homogeneous solution (1 µL) was dried under atmospheric pressure and ambient temperature (25 °C). MS spectra were typically acquired by averaging 20 sub-spectra from a total of 500 shots of the laser (Smartbeam 2. Version: 1_0_38.5, Bruker Daltonik, Leipzig, Germany).
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2

Glycoprotein Structure Analysis by ISD-MS

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All spectra were acquired
on an ultraflex III instrument (Bruker, Bremen, Germany) equipped
with a 200 Hz Smartbeam Nd:YAG laser (355 nm). The ISD spectra from
intact glycoprotein were acquired in the positive reflectron mode
with 1000 laser shots and a random walk. The generated ions were accelerated
to the kinetic energy of 25.0 kV. The low-mass ion deflector cutoff
was set to 700 Da. In the laser-desorption/ionization (LIFT) TOF/TOF
mode, the ISD fragment ions were accelerated to 8 kV in the MALDI
ion source and selected in a time gate. The selected ISD ion was further
accelerated to 19 kV in the LIFT cell. The metastable post-source
decay (PSD) ions were analyzed without any additional fragmentation
process, such as collision-induced dissociation.
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3

Characterization of Dendrimer Compounds

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The identities of the compounds were confirmed by the following methods. Both 1H-NMR (600 MHz) and 13C-NMR (100 MHz) spectra were recorded using a JEOL JNM-ECA 600 (JEOL Ltd., Tokyo, Japan) (and JNM-ECA 920 (JEOL Ltd., Tokyo, Japan)) spectrometer, respectively. The spectra were measured in CDCl3 solvents at room temperature, DMSO-d6 and D2O solvents at 40 °C and 4,4′-dimethyl-4-silapentane-1-sulfonate (DSS) as an internal standard. MALDI TOF mass spectra were measured by a Bruker Ultraflex III instrument (Bremen, Germany) with a 337 nm nitrogen laser. The dendrimer sample solutions (1 μL, 1 mg/100 μL of MeOH:THF = 1:1) and the matrix solution (1 μL, 2,5-dihydroxybenzoic acid of 2 mg/100 μL MeOH:THF = 1:1) were applied to the 24 × 16 well ground steel MALDI probe (Bruker Daltonics K.K., Yokohama, Japan). The dendrimers sample solution (1 μL, 1 mg/100 μL of 0.1% (v/v) TFA in ACN:H2O = 2:1) and the matrix solution(1 μL, 2,5-dihydroxybenzoic acid of 2 mg/100 μL of 0.1% (v/v)TFA in ACN:H2O = 2:1) were applied to the 24 × 16 well ground steel MALDI probe. The sample was dried by air evaporation and then the nitrogen laser was irradiated to each sample to obtain the corresponding mass spectrum.
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