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Inova 500 nmr spectrometer

Manufactured by Agilent Technologies
Sourced in United States

The Inova-500 NMR spectrometer is a laboratory instrument designed for nuclear magnetic resonance (NMR) spectroscopy. It features a 500 MHz superconducting magnet and is capable of performing high-resolution one-dimensional and two-dimensional NMR experiments on a variety of sample types.

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21 protocols using inova 500 nmr spectrometer

1

Characterization of GelMA/Bio-IL Hydrogels

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1H NMR analyses were performed to characterize GelMA/Bio-IL composite hydrogels using a Varian Inova-500 NMR spectrometer. 1H-NMR spectra were obtained from choline bicarbonate, choline acrylate (Bio-IL), GelMA prepolymer, and GelMA/Bio-IL hydrogels. Methacrylated groups were identified due to the presence of peak values at δ = 5.3 and 5.7 ppm. The decreasing rate for the C=C double bond signals ((C=C)t) in methacrylate group of GelMA was associated with the extent of crosslinking of composite hydrogel as well as conjugation of Bio-IL to GelMA. This area decrease was calculated using the following equation: Decayofmethacrylategroup(%)=(PAbPAaPAb)×100 where PAb and PAa represent the peak areas of methacrylated groups before and after photocrosslinking, respectively. Accordingly, PAb − PAa corresponds to the concentration of methacrylated groups consumed in the photocrosslinking process. ACD/Spectrus NMR analysis software were used to integrate the area under the peaks and all the data was analyzed with respect to phenyl group peaks at δ = 6.5–7.5 ppm.
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2

Quantitative 31P NMR Analysis of Lignin

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The hydroxyl group content of the lignin samples was measured using quantitative 31P NMR spectroscopy. The samples (30–40 mg) were dissolved in 500 μL of anhydrous pyridine and deuterated chloroform (1.6:1, v/v). This was followed by the addition of 50 μL of chromium(III) acetylacetonate (5.13 mg/mL in anhydrous pyridine and deuterated chloroform 1.6:1, v/v) used as the relaxation agent and 27.5 μL of cyclohexanol (21.07 mg/mL in anhydrous pyridine and deuterated chloroform 1.6:1, v/v) used as the internal standard. Finally, 100 μL of 2-chloro-4,4,5,5-tetramethyl-1,3,2-dioxaphospholane (TMDP) was added to the vial. The solution was thoroughly mixed and transferred to a sealed 5-mm NMR tube. All NMR experiments were carried out at 298 K on a Varian Inova 500 NMR Spectrometer operated at a frequency of 500.13 MHz and equipped with a 5 mm broadband inverse probe. 31P NMR spectra were recorded with 32,768 data points and a spectral width of 60,606.06 Hz, with a relaxation delay of 5 s and 512 scans. All chemical shifts are reported relative to the reference compounds of TDMP with cyclohexanol, which produces a sharp signal at 145.15 ppm referenced from the water signal (132.2 ppm) for the phosphitylating reagent [28 (link)].
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3

Quantifying Lignin Hydroxyl Groups

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The hydroxyl group content of the lignin and modified lignin samples was measured using quantitative 31P-NMR spectroscopy (Varian Inova, Palo Alto, CA, USA). The samples were derivatized with 100 μL of 2-chloro-4,4,5,5-tetramethyl-1,3,2-dioxaphospholane (TMDP). Derivatized samples (30–40 mg) were dissolved in 500 μL of anhydrous pyridine and deuterated chloroform (1.6:1, v/v) and mixed with 100 L of a solution of N-hydroxy-5-norbornene-2,3-dicarboxylic acid imide (10 mg mL−1) and chromium (III) acetylacetonate (5 mg mL−1) as internal standard and relaxation agent. The solution was thoroughly mixed and transferred to a sealed 5 mm NMR tube. All NMR experiments were carried out at 298 K on a Varian Inova 500 NMR Spectrometer [60 (link)]. 31P-NMR spectra were acquired using an inverse-gated decoupling pulse sequence with a 90-pulse angle, 25 s relaxation delay, and 256 scans.
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4

Quantification of Thiol Modification in Heparin

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Quantification of thiol concentration was based on a deprotection assay following PDPH manufacturers protocol and the modification was verified by NMR. The Thermofisher Scientific protocol for Pyridine-2-Thione Assay was used to determine the level of sulfhydryl modification. Briefly, the absorbance of the modified heparin was measured using a nanodrop before and after exposure to 1mg/mL DTT for 15 min at 343nm (Figure S1B). HNMR was also used to confirm PDPH modification. A Varian Inova 500 NMR spectrometer located in the UVA Biomolecular Magnetic Resonance Facility was used to acquire the spectra. 25 mg of each reaction was dissolved in deuterium oxide (Sigma). MestReNova was used for analysis, and 3 PDPH peaks (~7.4, 7.95, 8.45ppm) were compared to the acetyl peak of heparin(~2.1ppm) (Figure S1C).
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5

Synthesis and Characterization of Methacrylated Hyaluronic Acid

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Methacrylate groups were added to HA to yield the HA-glycidyl methacrylate (HAGM) conjugate as per the procedure mentioned by Rezaeeyazdi et al.103 (link), which allows cross-linking. Quantification of the degree of methacrylation was performed by 1H NMR analysis using a Varian Inova-500 NMR spectrometer. The degree of methacrylation was calculated according to a method previously described55 (link). The HAGM macromonomer was found to have a degree of methacrylation of approximatively 20% (Supplementary Fig. 5).
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6

Synthesis of BTZ043 and Derivatives

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Starting materials were purchased and used as received. Solvents were distilled prior to use and stored over 4 Å molecular sieves. Column chromatography was carried out using Merck silica gel 60 (63–200 µm). Flash chromatography was performed on a puriFlash® 430 instrument (Interchim, Montluçon, France). Prepacked columns with silica gel (30 μm) were used. The maximum compound load per column was 5% (m/m) of the silica gel quantity. The synthesis of BTZ043 is described elsewhere [27 ]. Melting points (uncorrected) were determined on a Boëtius hot-stage apparatus (VEB Kombinat, NAGEMA, Dresden, GDR). NMR spectra were recorded on an Agilent Technologies VNMRS 400 MHz and a Varian INOVA 500 NMR spectrometer. Chemical shifts are reported relative to the residual solvent signal (chloroform-d: δH = 7.26 ppm, δC = 77.16 ppm; methanol-d4: δH = 3.31 ppm, δC = 49.00 ppm; DMSO-d6 δH = 2.50 ppm, δC = 39.52 ppm). Abbreviations: s = singlet, bs = broad singlet, d = doublet, dd = doublet of doublets, m = multiplet. ESI high-resolution mass spectra (HRMS) were recorded on a Thermo Fisher Scientific LTQ Orbitrap XL mass spectrometer for 2b, 2c and 2e, and on a Thermo Scientific Q ExactiveTM Plus Orbitrap mass spectrometer for 2a and 2d.
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7

Quantifying Hydrogel Cross-Linking via NMR

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1H NMR analysis was performed to measure degree of cross-linking of GelCORE bioadhesive hydrogels as described elsewhere (32 (link)). Briefly, GelCORE adhesives were prepared in cylindrical molds and lyophilized as described earlier. Then, both GelCORE adhesives and prepolymer were partially dissolved in DMSO-d6. 1H NMR spectra were obtained from GelCORE bioadhesive hydrogels at different cross-linking times and prepolymer solutions using a Varian Inova-500 NMR spectrometer. The peaks for the hydrogen atoms in methacryloyl (methacrylate and methacrylamide) groups were identified at δ = 5.3 and 5.7 ppm. Next, the area under these peaks was integrated for all the samples. At different light exposure times, the changes in the integrated area with respect to prepolymer solution were reported as degrees of cross-linking of bioadhesive hydrogels. This area was calculated using the following equation Decay of methacryloyl groups (%)=AbAaAb×100 where Ab and Aa show the integrated areas of methacryloyl groups before and after photocrosslinking, respectively.
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8

NMR Analysis of Degraded PBSA Films

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For NMR sample preparation, PBSA plastic films after 30 days of degradation (0.1~0.05 g) were dissolved in 3 mL of deuterated chloroform (CDCl3). The 1 H NMR analysis was conducted by the Industrial Technology Research Institute/Material and Chemical Laboratories (ITRI/MCL) with a Varian INOVA 500 NMR spectrometer (Varian Medical Systems, Inc., Palo Alto, CA, USA). The 1 H NMR spectra were recorded at 25 °C (128 scans, 1 s relaxation delay), and used tetramethylsilane (TMS) was employed as an internal reference for the reported chemical shifts.
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9

Analytical Techniques for Natural Products

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1H and 13C NMR spectra were run on a Varian INOVA 500 NMR spectrometer at 500 and 125 MHz, respectively, in CDCl3 or CD3OD at 25 °C. UV–Vis spectra were recorded with a Varian Cary 300 UV–Vis spectrophotometer. LC-MS analyses were run on an Agilent LC-MS ESI-TOF 1260/6230DA instrument operating in positive ionization mode. Flash column chromatography was performed on Merck Kieselgel 60 (230–400 mesh) at a medium pressure. Column chromatography (CC) was performed on Merck Kieselgel 60 (70–240 mesh), on Sephadex LH-20 (Pharmacia). Analytical TLC was performed on Merck Kieselgel 60 F254 or RP-18 F254 plates with 0.2 mm film thickness. Spots were visualized by UV light or by spraying with EtOH:H2SO4 (93:7) followed by heating for 5 min at 110 °C. Preparative TLC was performed on Merck Kieselgel 60 F254 plates, with 0.5 or 1 mm film thickness. HPLC purifications were carried out on an Agilent 1100 HPLC system, equipped with an UV detector set at 280 nm.
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10

Detailed Characterization of Novel Compounds

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All solvents and reagents were used as obtained. For verification of chemical structures, 1H NMR spectra were recorded with a Varian Inova 500 NMR spectrometer and referenced to dimethyl sulfoxide. Chemical shifts are expressed in ppm. Mass spectra were measured with Waters Micromass ZQ using an ESI source coupled to a Waters 2525 HPLC system operating in reverse mode with a Waters Sunfire C18 5 μm, 4.6 × 50 mm2 column. Purification of compounds was performed with either a Teledyne ISCO CombiFlash Rf system or a Waters Micromass ZQ preparative system. The purity was analyzed on an above-mentioned Waters LC—MS Symmetry (C18 column,4.6 × 50 mm2, 5 μM) using a gradient of 5–95% methanol in water containing 0.035% trifluoroacetic acid (TFA). Detailed synthetic schemes and characterization data are available in Supplementary Chemical Synthesis Details and else-where.5 (link),6 (link)
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