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6 protocols using anti sirt2

1

Western Blot Analysis of Acetylated Proteins

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For cell‐based experiments, cells were washed three times in PBS and resuspended with lysis buffer containing 50 mM Tris, pH 7.5, 150 mM NaCl, 1% Nonidet P‐40, 1 mg/ml aprotinin, 1 mg/ml leupeptin, 1 mg/ml pepstatin, 1 mM Na3VO4, and 1 mM phenylmethylsulfonylfluoride (PMSF), and 25 mM NAM and trichostatin A (TSA) for 20 min and centrifuged for 20 min at 13,800 g; the insoluble fraction was discarded. The lysates were fractionated by SDS/PAGE and transferred to nitrocellulose filter (NC) membranes. The membranes were blocked for 1 h with Tris‐buffered saline with Tween 20 (TBST) containing 5% (mass/vol) nonfat dry milk. After incubation with primary antibodies (anti‐acetylated tubulin (K40) (Proteintech), anti‐α‐tubulin (Invitrogen), anti‐SIRT2(Abcam) or anti‐His (Abmart), each diluted 1:1000), the membranes were washed and incubated with HRP‐conjugated anti‐mouse (Cell Signaling Technology) or anti‐rabbit secondary antibodies (Cell Signaling Technology), followed by detection using ECL Western blotting substrate (Bio‐Rad).
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2

Western Blot Analysis of Apoptosis and Oxidative Stress Markers

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H9C2 cells with different treatment were lysed, quantified and subjected to SDS-PAGE electrophoresis. Proteins were transferred to PVDF membranes (Cat # 1,620,177, Bio-Rad, Hercules, CA, USA) which were incubated with 5% nonfat milk in TBST and followed by incubation of primary antibodies at 4°C overnight. Then the PVDF membranes were washed with TBST and incubated with secondary antibodies. Protein expression was detected using BeyoECL Moon (Cat # P0018FS, Beyotime) under a Tanon 5200 machine (Shanghai, China). The detailed primary and secondary antibodies were listed as below: anti-cleaved caspase 3 (Cat # E83-77, Abcam); anti-caspase 3 (Cat # ab32351, Abcam); anti-Bax (Cat # WL01637, Wanleibio, Shenyang, China); anti-Bcl-2 (Cat # WL01556, Wanleibio); anti-β-actin (Cat # WL01372, Wanleibio); anti-Nrf2 (Cat # WL02135, Wanleibio); anti-Sirt2 (Cat # ab211033, Abcam); anti-HO-1 (Cat # EP1391Y, Abcam); anti-GST (Cat # ab138491, Abcam); anti-NQO1 (Cat # 11,451-1-AP, Proteintech, Wuhan, China); anti-FOXO3a (Cat # 66,428-1-Ig, Proteintech); anti-GCLM (Cat # 14,241-1-AP, Proteintech); anti-Keap1 (Cat # 10,503-2-AP, Proteintech). IgG(H + L)(HRP-labeled Goat Anti-Rabbit IgG(H + L)) and IgG(H + L)(HRP-labeled Goat Anti-Mouse IgG(H + L)) were purchased from Beyotime (Beijing, China). All protein expressions were normalized by β-actin expression.
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3

Western Blotting of SIRT2 Protein

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Western blotting was performed according to standard western blotting procedures. The harvested SH-SY5Y Cells were lysed in NP-40 buffer containing protease inhibitor cocktail (Sigma, USA) and 1 mM phenylmethylsulfonyl fluoride (Sigma, USA). Lysates were centrifuged at 12,000 g for 15 minutes at 4°C. Supernatants were collected, and protein concentrations were determined by the BCA Protein Assay Kit (Thermo, USA). Proteins were then separated via 10% SDS-PAGE and transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, USA). After blocking in 5% nonfat milk, the membranes were incubated with the following primary antibodies: a-tubulin (Abcam; 1:300) and anti-SIRT2 (Abcam; 1:1000). The proteins were visualized with enhanced chemiluminescence reagents (Pierce, Shanghai) in the machine (Azure Biosystems, USA).
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4

Histone Acetylation and Deacetylation Assay

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Unless otherwise noted, all chemical reagents were purchased from Sigma-Aldrich (St. Louis, MO). D5-SB was from C/D/N Isotopes Inc., D-288. Antibodies were the following: anti-pan Kac (1:1000, PTM Biolabs, PTM-101), anti-H4K16ac (1:15,000; PTM Biolabs, PTM-122), anti-H3 (1:5000, Abcam, ab1791), anti-H4 (1:5000, Abcam, ab31830), anti-Flag (1:10,000; Sigma-Aldrich, F7425), anti-Tubulin (1:10,000; Abcam, ab6160), and anti-SIRT2 (1:1000, Abcam, 23886). Anti-pan Kbz antibody (1:1000) was made by PTM Biolabs Inc. (Chicago, IL). MEFs derived from WT and Sirt2 KO mice are kind gifts of Dr. Chu-Xia Deng (NIH)35 (link). HepG2 (HB-8065), RAW (TIB-71), and 293T (CRL-3216) cell lines were purchased from ATCC (www.atcc.org) and used without further authentication. No mycoplasma contamination was detected using a MycoAlert™ Mycoplasma Detection Kit (Lonza, LT07-118).
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5

Antibodies for Histone and Protein Analysis

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Antibodies used in this study are listed as follows; rabbit: anti-acetyl-histone H3K18 (Cell Signaling Technology, 9675), anti-histone H3 (Cell Signaling Technology, 9715), anti-GFP tag (Thermo Fisher Scientific, A-11122), anti-PPM1B (Abcam, ab137811), anti-PPM1B (Bethyl Laboratories, A300-887A), anti-Phospho-NF-κB p65 (Ser536) (93H1) (Cell Signaling Technology, #3033), anti-PP1 alpha (Upstate Biotechnology, #07-273), anti-CRM1 (H-300) (Santa Cruz Biotechnology, sc-5595), anti-SIRT2 (Abcam, ab67299), and anti-EF-Tu (Archambaud et al., 2005 (link)); mouse: anti-α-tubulin (Sigma, T6074), anti-PPM1A [p6c7] (Abcam, ab14824), anti-NFκB p65 (F-6) (Santa Cruz Biotechnology, sc-8008), and anti-FLAG M2 (F3165, Sigma).
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6

Immunofluorescence Analysis of Cellular Proteins

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Cells plated on coverslips were fixed in 4% paraformaldehyde in PBS for 10 min. Cells were then blocked with 5% BSA containing 0.1% Triton X for 1 h. After that, the cells were incubated with primary antibodies (anti-SIRT2, Abcam; anti-LC3, Cell Signaling Technology; anti-p53, Invitrogen) overnight at 4°C. Afterward, cells were incubated with the Alexa 488 and 555 coupled secondary antibodies (Invitrogen) for 1 h at room temperature followed by counterstained with DAPI. Images were captured by Nikon fluorescence microscope (TE2000-S).
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