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18 protocols using sc 11769

1

Immunoblotting and Immunoprecipitation Antibodies

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For this study, we used antibodies to PML (1:250 for IB, 1:100 for IP, sc-966, Santa Cruz Biotechnology, Delaware Ave., Santa Cruz, CA, USA), PML (1:500 for immunohistochemistry (IHC), sc5621, Santa Cruz Biotechnology, Delaware Ave.), HA (1:1000 for IB, 1:200 for IF, A190-108 A, Bethyl Laboratories Inc., Montgomery, TX, USA), β-actin (1:5000 for IB, A5441, Sigma-Aldrich, St Louis, MO, USA), Exportin-1 (CRM1; 1:5000 for IB, 1:2000 for IHC, A300-469A, Bethyl Laboratories Inc.), E-Cadherin (1:500 for IF, 610181, BD Transduction Laboratories, San Jose, CA, USA), EMT antibody Sampler Kit (9782, Cell Signaling Technology, Danvers, MA, USA), which contains rabbit antibodies each used at 1:300 (IB), N-Cadherin and Vimentin antibodies were used at 1:500 for IF, Phospho-Smad2/Smad3 (1:300 for IB, 8828, Cell Signaling Technology), Phospho-Smad2/3 (1:100 for IHC, sc-11769, Santa Cruz Biotechnology), Anti-rabbit IgG, HRP-linked Antibody (1:1000 for IB, 7074, Cell Signaling Technology), Anti-TGFβ Receptor I (1:1000 for IB, 3712, Cell Signaling Technology), Anti-SMAD2 (1:1000 for IB, 3122, Cell Signaling Technology), Anti-SMAD3 (1:1000 for IB, 9513, Cell Signaling Technology), Anti-phospho-SMAD2 (1:500, SAB4504207, Sigma-Aldrich), Anti-phospho-SMAD3 (1:500, SAB4300253, Sigma-Aldrich), Anti-mouse IgG, HRP-linked antibody (1:1000 IB, 7076, Cell Signaling Technology).
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2

Western Blot Analysis of EMT Markers

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Cells (please see below) were lysed by using lysis buffer for western blotting (P00l3, Beyotime) and loaded onto 10% sodium dodecyl sulphate-polyacrylamide gels and were then transferred onto polyvinylidene difluoride membranes (Millipore). The quantification of total protein was performed using a Pierce BCA Protein Assay kit (Thermo Fisher Scientific), and equal amounts of protein (30 μg) were used for analysis. Blots were blocked with 5% milk/TBST and incubated with primary antibodies (Twist1: 1:500, sc-15393, Santa Cruz Biotechnology; Slug: 1:1,000, 6591, Cell Signaling Technology; Snail: 1:1,000, ab53519, Abcam; Vimentin: 1:1,000, 2707-1, Epitomis; EphA2: 1:500, sc-924, Santa Cruz Biotechnology; VE-cadherin: 1:500, ab33168, Abcam; MMP2: 1:500, ab37150, Abcam; E-cadherin: 1:200, SC-8426, Santa Cruz Biotechnology; p-smad2/3: 1:500, sc-11769, Santa Cruz Biotechnology) at 4°C overnight, followed by incubation with secondary antibodies (goat anti-mouse IgG-HRP and goat anti-rabbit IgG-HRP, 1:2,000; sc-2005 and sc-2030; Santa Cruz Biotechnology) for 2 h at room temperature. Blots were developed using an enhanced chemiluminescence detection kit (Amersham Pharmacia Biotech). For protein loading analyses, p-actin antibody (1:1,000, P30002, Abmart) or GAPDH (1:2,000, ab9485, Abcam) was used.
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3

Protein Expression and Signaling Analysis

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Immunohistochemistry and immunocytochemistry were performed to examine the expression of ESRP, E-cadherin, and vimentin in cells according to the manufacturer’s instructions. Western blotting assays were also performed using whole cell lysates. Cell lysates were prepared and separated by SDS/PAGE. Proteins were transferred on to PVDF membrane, and membranes probed primary antibodies including ESRP1/2 (anti-RBM35A+RBM35B, ab106555, Abcam), Smad (ab207447, Abcam), or p-Smad (sc-11769, Santa Cruz Biotechnology) overnight at 4°C, then blotted with corresponding secondary antibodies (ab136817 and ab6785, Abcam). Visualization was accomplished using BioRad ChemiDoc™ XRS system (Hercules, CA) with electrochemiluminescence substrate. Protein levels were normalized to match densitometric values of internal controls. In addition, ELISA was performed to examine the level of TGF-β1 (ab119557, Abcam) in BALF according to the manufacturer’s instructions.
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4

Immunohistochemical Analysis of NDRG2 and p-Smad2/3 in Colorectal Cancer

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IHC was performed on all CRC samples using the avidin-biotin-peroxidase method. All sections were deparaffinized in xylene and dehydrated using a concentration gradient of alcohol before endogenous peroxidase activity was blocked using 0.5% H2O2 in methanol for 10 min. After non-specific binding was blocked, the slides were incubated with a NDRG2 polyclonal antibody (1:200; ABNOVA, Jhongli, Taiwan) or p-Smad2/3 (1:100, sc-11769; Santa Cruz Biotechnology, Inc, Santa Cruz, CA, USA) in phosphate-buffered saline at 4 °C overnight in a humidified container. Biotinylated goat anti-rabbit IgG (1:400; Sigma, St. Louis, MO, USA) was incubated with the sections for 1 h at room temperature and detected with a streptavidin-peroxidase complex. The brown color indicative of peroxidase activity was developed by incubating with 0.1% 3,3-diaminobenzidine (Sigma) in phosphate-buffered saline with 0.05% H2O2 for 5 min at room temperature. The appropriate positive and negative controls were included in each IHC run.
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5

Immunofluorescent Localization of pSMAD2/3 and PDCD4

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Localization of endogenous pSMAD2/3 and PDCD4 was assessed by immunofluorescent staining. U251 GBM cells were seeded on 4 well chamber slides (Lab-Tek.,Thermo Fischer Scientific) . After attachment and treatment as indicated, cells were fixed in 4% paraformaldehyde (in PBS +0.1% Triton X-100 for permeabilisation) (pH 7.4,) and then blocked with 3% BSA in PBS, followed by overnight incubation with goat polyclonal-anti- pSMAD2/3 (sc-11769, (Santa Cruz Biotechnology, Santa Cruz, CA)) and rabbit-anti-PDCD4 primary antibody (#9535, CST) (1:500 dilution with PBS containing 3% BSA). Alexa flour conjugated AffiniPure donkey anti-goat IgG and goat-anti-rabbit IgG secondary antibodies (Invitrogen) were then applied. Slides were then mounted with fluorescent medium VECTASHIELD containing DAPI (Nuclear stain) (Vector Laboratories Inc., Burlingame, CA) to preserve the fluorescent signal. The localization of endogenous pSMAD2/3 and PDCD4 were visualized and images captured with Olympus FSX100 fluorescent microscope.
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6

Immunohistochemical Analysis of Fibrotic Markers

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Three µm sections were processed for immunohistochemistry as follows. Endogenous peroxidase was blocked with 3% hydrogen peroxide and immunohistochemical staining for fibronectin (F3648, 1∶100 dilution; Sigma-Aldrich, St Louis, MO, USA), collagen I (Ab21286, 1∶800; Abcam, MA, USA), α-SMA (A2547, 1∶1,000; Sigma-Aldrich, St Louis, MO, USA and NCL-MSA 1∶200; Leica Microsistemas, Barcelona, Spain), phospho-Smad2/3 (sc-11769, 1∶50 dilution; Santa Cruz Biotechnology Inc, CA, USA) and phospho-Smad1 (Ab63439, 1∶50 dilution; Abcam, Cambridge, UK) were performed. Then, sections were washed three times in PBS and incubated with the Novolink Polymer Detection System (Novocastra, MA, USA), followed by reaction with 3,3′diaminobenzidine as chromogen. Negative WT slides were prepared without primary antibody.
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7

Cardiac Tissue Protein Analysis

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Cardiac tissue or cardiomyocyte lysates were prepared using ice-cold RIPA buffer (Thermo Fisher Scientific) containing Complete Protease Inhibitor Cocktail and PhosSTOP (Roche). Lysates or culture medium were cleared by centrifugation, reduced, subjected to Western blot using a NuPage system (Invitrogen), and probed with antibodies against TGF-β 1/2/3 (Santa Cruz Biotechnology), TGF-β (Abcam), Troponin I (Abcam), Smad6 (ab13727, Abcam), phospho-Smad1/5 (Thermo Fisher), and phospho-Smad2/3 (sc-11769, Santa Cruz Biotechnology).
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8

Quantitative Histological Analysis of Cardiac Fibrosis

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The apex of the heart tissue was fixed with 4% phosphate buffered saline (PBS) buffered paraformaldehyde, embedded in paraffin, and then sectioned into 3 μm thicknesses and stained with Masson trichrome according to the standard procedure. Masson trichrome staining causes muscle fibers to turn red and collagen fibers to turn blue. Immunohistochemistry (IHC) staining was used to detect the distribution and expression of biomarkers for fibrosis. We used a microwave-based heating antigen retrieval and 3% H2O2 to block non-specific staining. The antibodies used included: collagen I (1310-01, SouthernBiotech, Birmingham, AL, USA; 1:200 dilution), collagen III (GB111629, Servicebio, Wuhan, China; 1:200 dilution), α-SMA (GM085102, Gene Tech, Shanghai, China; 1:200 dilution), phosphorylated Smad2/3 (sc-11769, Santa Cruz Biotechnology, Dallas, TX, USA; 1:200 dilution), and anti-β-catenin (610154, BD Transduction Laboratories, Shanghai, China; 1:50 dilution). Images were quantitatively analyzed using Image-Pro Plus v 6.0 (Media Cybernetics, Rockville, MD, USA). Briefly, the accumulation of collagens I and III and α-SMA in 10 random areas, except staining around blood vessels, was analyzed under 200× for the percentage of positive areas in the examined field. Numbers of p-Smad2/3+ cells were counted in 10 random areas for each sample under 400×.
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9

Immunohistochemical Analysis of Murine Knee Joints

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Knee joints were dissected from mice, the attached muscle was carefully removed and the tissues were fixed overnight with 10% formalin at 4 °C. After washing three times with ice-cold PBS, the samples were decalcified at 4 °C using 10% EDTA (pH 7.4) for 21 days and then embedded in paraffin. Four-micrometer-thick sagittal sections of the medial compartment of the knee were used for staining. The sections were stained with individual primary antibodies against COX-2 (ab15191, 1:100, Abcam), osterix (ab22552, 1:100, Abcam), OCN (M137, 1:100, Takara Bio Inc., Kusatsu, Shiga Prefecture, Japan), pSmad2/3 (sc-11769, 1:50, Santa Cruz Biotechnology Inc., Dallas, TX, USA), and MMP13 (ab3208, 1:50, Abcam) at 4 °C overnight. We used the horseradish peroxidase–streptavidin detection system (Dako) to detect the immunoreactivity. Then, we counterstained the sections with hematoxylin (Sigma-Aldrich). We counted the number of positively stained cells in four random visual fields of the subchondral bone in five sequential sections from each mouse in each group. For OCN staining, we normalized the number of positively stained cells to the number of cells per millimeter of adjacent bone surface (N·mm−1) in subchondral bone.
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10

Immunohistochemical Analysis of Bone and Cartilage

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Immunohistochemical analyses of sections of each construct were performed using an Anti-Rabbit/Mouse HRP-DAB Cell & Tissue Staining Kit (R&D Systems, USA). Sections were subjected to epitope recovery in citrate buffer at 99 °C for 30 min. Once room temperature was reached, slides were washed in triethanolamine-buffered saline, and nonspecific immunoglobulin binding was blocked with 5% (V/V) bovine serum albumin for 30 min at room temperature. Sections were incubated overnight at 4 °C with the following primary antibodies: rabbit anti-Osterix (Santa Cruz Biotechnology, 1:100, USA); rabbit anti-Col X (Abcam, 1:100, ab58623) and a TGF-β pathway-specific antibody against p-Smad2/3 (sc-11769, Santa Cruz Biotechnology, 1:100, USA). All sections were incubated with a biotinylated secondary antibody, stained using an R&D HRP-DAB Staining Kit and counterstained with haematoxylin. After mounting, the slides were photographed with an Olympus BX53 microscope (Olympus, Japan). The numbers of Col X-positive cells in the cartilage layer, TRAP-positive osteoclasts, Osterix-positive cells and p-Smad2/3-positive cells in the posterior and middle condylar subchondral bone were determined. The percentages of positive cells in all chondrocytes are shown. All sections were placed onto one slide and processed together under the same conditions.
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