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11 protocols using ab62698

1

Immunohistochemistry Analysis of NLRP3 and IL-1β

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IHC was performed described previously [44 (link)]. Wax blocks containing tissue blocks were sectioned. The reaction was fulfilled for 30 min with a blocking solution containing 10% calf serum (Gicbo, Life Technologies, Carlsbad, CA). The primary antibodies (anti-Ki-67 [ab271811, 1 : 100, Abcam], anti-NLRP3 [ab214185, 1 : 100, Abcam], anti-caspase-1 [ab62698, 1 : 100, Abcam], and anti-IL-1β [ab283818, 1 : 500]) were added overnight at 4 °C, and PBS (Hyclone, Logan, USA) was used as a negative control instead of primary antibodies. The secondary antibodies were added dropwise with biotin-labeled IgG (ab205719, 1 : 1000, Abcam) and reacted at 37 °C for 1 h. Finally, DAB (Dako, Denmark) was used for color development and hematoxylin contrast staining and sealed with gelatin. The scoring criteria for immunohistochemistry were done by the physicians of the pathology department of our hospital.
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2

Western Blot Analysis of Inflammatory Proteins

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Total proteins were extracted from cultured cells with RIPA buffer, and protein concentration was determined using BCA protein assay kit (Thermo Fisher Scientific). Equal amounts of proteins were separated using SDS/10% polyacrylamide gel electrophoresis (SDS/PAGE), transferred to 0.22 µm polyvinylidene difluoride (PVDF) membranes, and incubated with specific antibodies. Proteins were detected using chemiluminescence (ECL). The intensity of the bands was quantified by ImageJ. Primary antibodies, ASC (ab227502, ABCAM), caspase-1 (ab62698, ABCAM), p-caspase-1, IL-1β (BA3711, BosterBio), p-IL-1β, IL-18 (PB0057, BosterBio), p-IL-18, and GAPDH (A00227-1, BosterBio) were obtained from Cell Signaling Co. (Cell Signaling Technology, U.S.A.).
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3

Western Blot Analysis of Inflammatory and TGF-β Signaling

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The expression of NLRP3, ASC, caspase-1, IL-1β, Smad2, Smad3, p-Smad2, p-Smad3 and TGF-β in tissues and cells was detected by Western blotting. Total protein was extracted from BRL-3A cells and the left liver lobe tissues and quantified by the BCA protein analysis kit. The proteins were separated by SDS-PAGE and transferred to the PVDF membrane. The GAPDH gene acts as a reference gene. Subsequently, the membrane was sealed with 5% skim milk powder and incubated overnight with primary antibodies NLRP3 (ab214185, 1: 500, Abcam, UK), ASC (ab168811, 1: 2000, Abcam, UK), caspase-1 (ab62698, 1: 500, Abcam, UK), IL-1β (ab2105, 1: 1000, Abcam, UK), Smad2 (ab40855, 1: 2000, Abcam, UK), Smad3 (ab40854, 1: 1000, Abcam, UK), p-Smad2 (ab53100, 1: 500, Abcam, UK), p-Smad3 (ab63403, 1: 500, Abcam, UK) and TGF-β (ab92486, 0.5–4 µg/mL, Abcam, UK) at 4°C.The next day, after washing with TBST for 3 times, the membrane was incubated with horseradish peroxidase-labeled secondary antibody at room temperature for 1 h. Proteins were visualized using enhanced chemiluminescence kits and gel imaging systems. The results are analyzed by Image Tools.
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4

Fluorescent Immunolabeling of Inflammatory Proteins

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Cells or tissues were fixed in 4% paraformaldehyde (in 1× PBS), followed by permeabilization in 0.25% Triton X-100 for 15–30 min, then they were washed in PBS and incubated with primary antibody for at least 1 h at room temperature. Following washing in PBS, cells/tissues were incubated with Alexa Fluor–conjugated secondary antibodies. Alexa Fluor–conjugated phalloidin was purchased from Invitrogen (A12381). Rabbit anti–IL-1β (ab9722) and anti–caspase-1 (ab62698) antibodies were purchased from Abcam. Rabbit anti–gasdermin D (96458), cleaved gasdermin D (36425), and cleaved IL-1β (83186) were purchased from Cell Signaling Technology. Cells or tissues were mounted with VECTASHIELD mounting medium (H-1200; Vector Laboratories) containing DAPI, and images were captured using an Olympus IX83 inverted fluorescence microscope or a Zeiss LSM confocal microscope. Images were adjusted for brightness/contrast using Adobe Photoshop (Adobe). For three-dimensional sections, confocal images were acquired at 0.35–0.5-µm intervals.
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5

Protein Expression Analysis in Cell Lines

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HK-2 cells and animal tissues were lysed using RIPA lysis buffer (Thermo Fisher Scientific, MA, USA). Each protein sample was electrophoresed by 12% SDS-PAGE and transferred to polyvinylidene fluoride membranes (Sigma-Aldrich). Next, the membranes were blocked with 5% bovine serum albumin (BSA) at room temperature for 2 h and incubated with the following primary antibodies: anti-IRF2 (ab124744, 1:1000, Abcam); anti-Bax (ab32503, 1:1000, Abcam); anti-Bcl-2 (ab196495, 1:1000, Abcam); anti-caspase-1 (ab62698, ab138483, 1:1000, Abcam); anti-caspase-4 (4450, 1:1000, Cell Signaling Technology, MA, USA), anti-caspase-11 (ab246496, 1:1000, Abcam); anti- apoptosis-associated speck-like protein (ASC; 13833, 67824, 1:1000, Cell Signaling Technology); anti-TNF-α (3707, 1:500, Cell Signaling Technology); anti-IL-1β (12242, 1:500, Cell Signaling Technology); anti-IL-18 (54943, 57058, 1:500, Cell Signaling Technology); anti-IL-6 (ab259341, 1:500, Abcam); anti-GSDMD (39754, 1:1000, Cell Signaling Technology); anti-NLRP3 (13158, 15101, 1:1000, Cell Signaling Technology); and GAPDH (ab8245, 1:3000, Abcam) overnight at 4 °C. Each membrane was incubated with corresponding secondary antibodies (7233, 7076, 1:5000, Cell Signaling Technology) for 1 h at room temperature. Protein expression was detected using an enhanced chemiluminescence detection kit (Thermo Fisher Scientific).
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6

Histological and Immunohistochemical Analysis of Patient and Porcine Tissue

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Patient biopsies and porcine spine punches were fixed in 4% buffered formalin and paraffin embedded. Sections (2 μm) were stained with hematoxylin and eosin (H&E), Brown–Brenn (BB), Safranin-o, and Fast-green or Gram-staining. For immunohistochemistry (IHC), formalin-fixed paraffin-embedded tissue sections were pre-treated with the BOND Epitope Retrieval Solution 2 (Leica Biosystems) at 100°C for 30 min. They were stained with anti-cleaved caspase-3 antibody (polyclonal, ab2302, abcam) and caspase-1 antibody (polyclonal, ab62698, abcam) for 30 min. For detection, the slides were stained with the Bond Polymer Refine Detection HRP Kit (Leica Biosystems), according to the manufacturer’s instruction, and counterstained with hematoxylin. Whole-slide scanning and photomicrography were performed with a 108NanoZoomer 2.0-HT digital slide Scanner (Hamamatsu, Houston, TX, USA).
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7

Immunoblotting Analysis of NLRP3, Caspase-1, and SIRT1

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Total proteins were prepared and mixed with loading buffer (Bio-Rad, Shanghai, China) and then loaded onto SDS-PAGE. The SDS-PAGE was put into electrophoresis apparatus with 100 V for 2 hours and then transferred to PVDF membrane. The membrane was blocked in 5% non-fat milk with PBST (Solarbio Life Sciences, Beijing, China) at room temperature for 2 hours. Anti-NLRP3 antibody (ab214185, Abcam, San Francisco, USA, 1: 1000), anti-caspase-1 antibody (ab62698, Abcam, San Francisco, USA, 1: 1000), cleaved caspase-1 (Asp297) (D57A2) (#4199, CST, MA, USA), anti-SIRT1 antibody (ab32441, Abcam, San Francisco, USA, 1: 1000), and anti-GAPDH antibody (ab181602, Abcam, San Francisco, USA, 1: 1000) were used separately to detect the target proteins at 4°C with shaking overnight. The membranes were then washed with PBST 3 times with shaking. The membrane was then probed with the secondary antibody IgG H&L (HRP) (ab6721, Abcam, San Francisco, USA, 1: 2000) for 1 hour at room temperature. Pierce™ ECL plus western blotting substrate (Thermo Fisher, Waltham, USA) was used to detect the proteins and images were taken.
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8

Western Blot Analysis of Inflammatory Proteins

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The total protein was extracted from placental tissues and HTR-8/SVneo cells using RIPA lysate (Beyotime, China) (with PMSF-protease and phosphatase inhibitor added), and then the protein concentration was measured by the BCA assay kit (Beyotime, China) according to the instructions of manufacturer. The protein samples of 30ug per well were added to 10% of the twelve-alkyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) slot to separate the protein and then electrotransferred onto the PVDF membranes. Next, the nonspecific site of the membranes were blocked with 5% skimmed milk for 1 h at room temperature and incubated overnight at 4 ℃ with first antibodies NLRP3 (1:1000, ab214185, Abcam), Caspase-1 (1:500, ab62698, Abcam), GSDMD (1:500, sc-81,868, Santa Cruz) and β-actin (1:1000, AF0003, Beyotime). On the second day, the membranes were incubated with the horseradish peroxidase (HRP) labeled secondary antibodies (1:1000, A0208/A0216, Beyotime) at room temperature for 1 h. Finally, under the action of ECL luminescent liquid, immunoreactive signals were detected by the Bio-Rad gel imaging system (MG8600 Thmorgan Biotechnology Co., Ltd., Beijing, China). The IPP6.0 software (Media Cybernetics, Singapore) was used to analyze the gray values and calculate the relative protein levels of NLRP3, Caspase-1 and GSDMD. The experiment was repeated at least three times.
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9

Western Blot for NLRP3 Inflammasome Proteins

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The liver tissues in each group were ground, and the hepatic cells in each group were harvested and washed with PBS. Total proteins were extracted using a protein extraction kit (BestBio; BB-3101), and the protein concentration in each extract was determined using the bicinchoninic acid (BCA) method. Next, a 20 μg aliquot of total protein from each extract was separated by 10% SDS-PAGE performed at 120 V. The separated protein bands were electrophoretically (200 mA for 90 mins) transferred onto PVDF membranes (Roche, Basal Switzerland, cat. no. 3010040001), which were subsequently blocked with 5% powdered skim milk. Next, the PVDF membranes were incubated with primary antibodies at 4°C overnight. After washing, the PVDF membranes were soaked with an HRP-labeled secondary antibody for 1 h and the immunostained protein bands were detected using the ECL chemiluminescence reagent (Millipore; KLS0500). The primary antibodies used in the study were as follows: NLRP3 (1 : 1000, Abcam, Cambridge, UK, ab214185), ASC (1 : 1000, Abcam, ab180799), and caspase 1 (1 : 1000, Abcam, ab62698).
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10

Western Blot Analysis of Inflammasome Proteins

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After extracting the total proteins from cells and tissues, the separation was performed by 10% SDS-PAGE [22 (link)]. Then, the proteins were transferred to the PVDF membrane, followed by blocking for 1 h. Primary antibodies including anti-caspase-1 (ab62698, 1 : 1000, Abcam), anti-ASC protein (13833, 1 : 1000, Cell Signaling Technology), anti-GSDMD (39754, 1 : 1000, Cell Signaling Technology), anti-NLRP3 (13158, 1 : 1000, Cell Signaling Technology), and GAPDH (ab8245, 1 : 3000, Abcam) and the corresponding secondary antibodies were used. A hypersensitive ECL (BiossciBio, Hubei, China) was used for detection.
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