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25 protocols using horseradish peroxidase hrp conjugated secondary antibody

1

Quantifying Autophagy and Apoptosis Markers

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To determine APN, LC-3, Beclin 1, Akt/P-Akt, P62, C-caspase-3/P-caspase-3 levels, proteins were extracted from the cells by suspension in radioimmunoprecipitation assay (RIPA) buffer. Samples were centrifuged at 12,000 rpm at 4°C for 30 min, and the supernatants were recovered for analysis. The protein concentrations were determined using the Bradford protein method and the bicinchoninic acid (BCA) protein assay kit (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany). Protein (40 µg) was electrophoresed on a pre-cast bis-Tris polyacrylamide gel (12%), and then transferred onto a polyvinylidene difluoride (PVDF) membrane. Membranes were blotted with rabbit anti-APN (1:1,000), rabbit anti-LC3B (1:500), rabbit anti-beclin 1 (1:1,000), rabbit anti-Akt (1:1,000), rabbit anti-p-Akt (1:1,000), rabbit anti-P62 (1:1,000), rabbit anti-Caspase-3 (1:1,000) (all from Abcam, Cambridge, MA, USA) and mouse anti-actin (1:1,000; ProteinTech Group, Inc., Chicago, IL, USA), followed by horseradish peroxidase (HRP)-conjugated secondary antibodies (1:5,000; ZsBio, Beijing, China). Immunoblots were visualized using enhanced chemiluminescence (LAS-4000).
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2

Quantitative Western Blot Analysis

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The HGFs were lysed in RIPA lysis buffer with PMSF (Beyotime, Shanghai, China), protease inhibitor cocktail and phosphatase inhibitor cocktail on ice for 30 min and quantified with a BCA kit (Beyotime). An equal amount of protein (30 μg) from each sample was subjected to SDS-PAGE and then transferred onto polyvinylidene difluoride (PVDF) membranes (Thermo Fisher). After blocking with 5% skimmed milk at room temperature for 2 h, the membranes were incubated with primary antibodies (anti-p65, anti-p–p65 (1:1000, Abcam, Cambridge, United Kingdom) and anti-GADPH (1:1000, Protein, Abclonal)) at 4 °C overnight followed by incubation with horseradish peroxidase (HRP)-conjugated secondary antibodies (1:10,000, ZSGB-Bio, Beijing, China) for 1 h at room temperature. Finally, protein expression was detected by chemiluminescence.
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3

IHC Staining of Tissue Microarray

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The tissue microarray was used for IHC staining as previously described39 (link). Briefly, paraffin sections of the tissue microarray were dewaxed, deparaffinized in xylene, and rehydrated through a graded ethanol series. After heating in a pressure cooker for 5 min for antigen retrieval, the sections were subjected to endogenous peroxidase elimination. Primary antibodies against NFIB (Abcam, UK) and Ki67 (Proteintech, China) were added to the sections and incubated overnight at 4 °C. The sections were then incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (ZSGB-BIO, China) for 1 h at 37 °C and stained with diaminobenzidine (BOSTER, China) and hematoxylin. Sections incubated with PBS were used as negative controls. The immunoreactive percentage and intensity were scored. The percentage of positive cells was graded as 0, <5%; +1, 5–25%; +2, 26–50%; +3, 51–75%; and +4, 76–100% positive cells, and the intensity of cellular staining was scored as 0, negative; +1, weak; +2, moderate; and +3, strong. The final staining score was obtained by multiplying the two scores.
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4

Western Blotting Visualization of CXCL5

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Western blotting was performed according to a standard protocol. Total cell or tissue lysates were extracted using 2% SDS lysis buffer (Applygen, Beijing), and 30 μg of total proteins were separated on 12% (v/v) SDS-PAGE gels. After electrophoresis, the proteins were transferred onto nitrocellulose membranes (Millipore, Ireland) and the membrane was incubated with the anti-CXCL5 antibody (1:500, ab9802, Abcam) and anti-GAPDH antibody (1:1000, H-12; Santa Cruz Biotechnology) at 4 ℃ overnight. After washing three times, the membranes were incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (1:2000, Zsbio, Beijing) for 1 h at room temperature. Finally, the membranes were visualized using an ECL Kit (Applygen, Beijing).
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5

Western Blot Analysis of Protein Expression

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Treated tissues and cells were lysed by RIPA Lysis Buffer (Beyotime, Shanghai, China), and the protein concentration was measured by BCA protein assay kit (Beyotime, Shanghai, China). The immunoblotting was performed as previously described [47 (link)]. Briefly, the protein was separated in 12% SDS denatured polyacrylamide gel and then transferred onto a polyvinylidene difluoride membrane. The membranes were blocked with 5% skim milk in Tris-buffered saline, pH 7.4, containing 0.1% Tween 20, at room temperature for 1 h, and were incubated with appropriate antibodies at 4°C overnight respectively. Membranes were washed and incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (1:3000, ZSGB-BIO, Beijing, China) according to the manufacturer's instructions. Finally, the protein of interest was visualized using Immobilon Western Chemiluminescent HRP Substrate (Millipore, Billerica, MA, USA).
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6

Western blot analysis of retinal proteins

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Western blot was performed using the documented standard methods as we have done before [9 ]. Retinas (four eyes from four mice from each group) were dissected, immersed and homogenized in 0.1% triton X-100 extraction buffer (Solarbio, Beijing, China) containing phenylmethylsulfonyl fluoride (PMSF) and dithiothreitol (DTT), then the lysates were centrifuged to remove insoluble material, after which total retinal protein was extracted. Protein concentration was measured by a protein assay (Bradford Protein Assay; Bio-Rad, Hercules, CA, USA), and adjusted to allow equal total protein loading on the gels. Proteins were transfer to polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MA, USA) using standard electroblotting procedures. Then membranes were blocked with 5% skim milk and then incubated with cyclin D1(1:500 in 5% BSA) (AC853, Beyotime Biotechnology, Jiangsu, China), or β-actin (1:5000 in 5% BSA) (Santa Cruz Biotechnology, Santa Cruz, CA, USA) primary antibodies at 4 °C overnight. Then membranes were incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (ZSGB-BIO, Beijing, China) at 37 °C for 1 h, and visualized by the ChemiDoc™ MP System (Bio-Rad, Hercules, CA, USA). Protein bands were quantified using Image-Pro plus 6.0 analysis software.
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7

Quantifying FASN Protein Levels

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To determine the FASN level, proteins were extracted from the tissues by suspension in radioimmunoprecipitation assay (RIPA) buffer (Solarbio). The samples were centrifuged at 13,523 × g at 4°C for 38 min, and the supernatants were recovered for analysis. The protein concentration was determined using the bicinchoninic acid (BCA) protein assay kit (Sigma-Aldrich; Merck KGaA). Protein samples (40 µg) were electrophoresed on a pre-cast bis-Tris polyacryl-amide gel (8-12%) and then transferred onto a polyvinylidene difluoride membrane (EMD Millipore). The membranes were blotted with rabbit anti-FASN (1:1,000) and mouse anti-actin (all from ProteinTech Group, Inc.) followed by horseradish peroxidase (HRP)-conjugated secondary antibodies (1:5,000; ZsBio). Immunoblots were visualized using enhanced chemiluminescence (LAS-4000; GE Healthcare).
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8

Western Blot Analysis of Osteogenic Markers

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Western blotting was carried out as described previously.45 (link) Total protein was extracted from the cultured cells using RIPA lysis buffer (Beyotime, Nanjing, China), which was supplemented with a protease inhibitor cocktail according to the manufacturer’s instructions. The protein mixtures were centrifuged to remove cellular debris. The extracted proteins were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and electrotransferred to polyvinylidene fluoride (PVDF) membranes (Amersham, Little Chalfont, UK). The PVDF membranes were blocked for 2 h at room temperature using 5% non-fat milk (BD Biosciences, San Jose, CA). The membranes were incubated at 4 °C overnight with the following primary antibodies: anti-OCN (1:1 000; Boster Biological Technology, Wuhan, China), anti-BSP (1:1 000; Boster Biological Technology), anti-ALP (1:1000; Proteintech Group, Wuhan, China), anti-RUNX2 (1:1 000; Proteintech Group), and anti-GAPDH (1:1 000; Boster Biological Technology). Subsequently, the membranes were incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (ZSGB-Bio) for 1 h at room temperature. The immunoreactive bands were visualized using an ECL chemiluminescence reagent (Solarbio). The relative intensities were analyzed and compared to their respective controls using ImageJ software (NIH, USA).
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9

Mouse Heart Histological Analysis

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The hearts of mice were isolated and fixed in 4% paraformaldehyde, embedded in paraffin, and cut into 5-μm cross-sections. H&E, Sirius red, and Masson’s trichrome staining were performed according to the manufacturer’s instructions using staining kits (Solarbio, Beijing, China).
For IHC, the sections were dewaxed and subjected to antigen retrieval with citrate buffer (pH 6.0), followed by treatment with 3% H2O2. The sections were then blocked with 5% goat serum for 30 min at 37°C and incubated with primary antibodies at 4°C overnight. The next day, the sections were incubated with horseradish peroxidase (HRP)–conjugated secondary antibodies (ZSGB-Bio, Beijing, China) for 30 min at room temperature, and detection was performed using a 3′-diaminobenzidine (DAB) kit (ZSGB-Bio, Beijing, China). Hematoxylin was used for nuclear staining. All histological images were examined and photographed under a microscope (Ti-S, Nikon) and analyzed with the Image-Pro Plus 6.0 software (Media Cybernetics Inc., USA). The primary antibodies used are listed in table S1. Sections reacting with nonimmune immunoglobulin G (IgG) as well as secondary antibodies were used as negative controls.
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10

Western Blot Analysis of MAPK Signaling

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Cells were lysed in RIPA buffer (50 mmol/L Tris [pH 8], 250 mmol/L NaCl, 0.05% sodium dodecyl sulphate, 0.5% deoxycholate, 1% NP‐40). Proteins were separated on a 10% Bis‐Tris protein gel (1.0 mm) and transferred to nitrocellulose membrane (Bio‐Rad). Antibodies used were p‐p38 MAPK (4631; CST), p38 MAPK (8690; CST), p‐JNK (4668; CST), JNK (9252; CST), p‐Erk1/2 (4370; CST), Erk1/2 (4695; CST) and α‐tubulin (41517; SAB). Horseradish peroxidase (HRP)‐conjugated secondary antibodies were purchased from ZSGB‐BIO. The membranes were detected with a chemiluminescent reagent kit. α‐Tubulin served as an internal control. For image analysis, the films were scanned with a GS‐700 imaging densitometer (Bio‐Rad). Relative protein expression levels were measured using ImageJ software (National Institute of Health).
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