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7 protocols using quantione 1 d analysis software

1

Western Blot Analysis of Cellular Proteins

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Total cell lysates (60 μg) have been electrophoresed on a 10 % sodium dodecyl sulphate (SDS)-polyacrylamide gel and transferred to nitrocellulose membrane. Nitrocellulose membranes, blocked in 5 % BSA, 10 mmol/L Tris-HCl pH 7.5, 100 mmol/L NaCl and 0.1 % Tween-20, have been probed with mouse anti β-actin and anti β-tubulin antibodies (Sigma, USA), goat pro-collagen I, mouse anti-BAX, mouse anti BCL2 antibodies (Santa Cruz, Santa Cruz Biotechnology, CA, USA), polyclonal anti NF-kB, IkBα and p-IkBα antibodies (Cell Signalling Technology) and then incubated in the presence of specific enzyme-conjugated IgG horseradish peroxidase. Immunoreactive bands have been detected by ECL detection system (Amersham Intl., Buckinghamshire, UK) and analysed by densitometry. Densitometric values, expressed as integrated optical intensity (IOI), have been estimated in a CHEMIDOC XRS system by the QuantiOne 1-D analysis software (BIORAD, Richmond, CA, USA). Obtained values have been normalized basing on densitometric levels of internal β tubulin and α-actin.
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2

Western Blot Analysis of Cell Signaling

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The cell lysates (20 µg) underwent electrophoresis and were transferred to the nitrocellulose membrane. The latter were blocked in 5% of non-fat milk in PBS 0.1% Tween-20, then incubated in the presence of mouse monoclonal anti-β actin antibody (antibody dilution 1:5000) (A5316 Sigma, St. Loius, MO, USA), rabbit polyclonal anti-Nitric Oxide Synthase-2 (NOS-2) antibodies (antibody dilution 1:200) (sc-651 purchased by Santa Cruz biotechnology, Santa Cruz, CA, USA), mouse monoclonal anti-Matrix Metalloproteinases-9 (MMP-9), and anti-Bax antibodies (antibodies dilution 1:200) (sc-5302 and sc-7480, respectively, both purchased by Santa Cruz biotechnology, Santa Cruz, CA, USA), goat polyclonal anti-caspase-3 antibody (antibody dilution 1:200) (sc-1225 purchased by Santa Cruz biotechnology, Santa Cruz, CA, USA). Samples were then probed with specific enzyme conjugated IgG horseradish peroxidase. Immunoreactive bands were revealed by ECL system (Amersham Int., Buckunghamshire, UK) and underwent densitometric analysis. Values obtained from densitometry, expressed as Integrated Optical Intensity (IOI), were evaluated with a CHEMIDOC XRS system through the QuantiOne 1-D analysis software (BIORAD, Richmond, CA, USA). Data were normalized with densitometric values derived from β-actin loading control.
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3

Western Blot Analysis of Liver Proteins

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Liver lysates (20 µg) were electrophoresed and transferred to nitrocellulose membrane. Nitrocellulose membranes, blocked in 5% non-fat milk, 10 mmol/L Tris pH 7.5, 100 mmol/L NaCl, 0.1% Tween-20, were probed with mouse monoclonal anti-β-tubulin antibody (T4026, Sigma-Aldrich, St Louis, MO, USA) (primary antibody dilution 1∶1000), mouse monoclonal anti-MMP-9 (catalog number: IM37, Calbiochem Merck, Cambridge, MA, USA) (primary antibody dilution 1 mg/ml) and rabbit polyclonal anti-e-NOS antibodies (Santa Cruz Biotechnology, Santa Cruz, CA, USA) (primary antibody dilution 1∶200) and then incubated in the presence of specific enzyme conjugated IgG horseradish peroxidase. Immunoreactive bands were detected by ECL detection system (Amersham Int, Buckinghamshire, UK) and analysed by densitometry. Densitometric values, expressed as Integrated Optical Intensity (IOI), were estimated in a CHEMIDOC XRS system by the QuantiOne 1-D analysis software (BIORAD, Richmond, CA, USA). Values obtained were normalized basing on densitometric values of internal β-tubulin.
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4

Immunoblot Analysis of Angiogenic Factors

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The C6 cell lysates (20 µg) were electrophoresed and transferred to the nitrocellulose membrane. Nitrocellulose membranes, blocked in 5% of non-fat milk in PBS 0.1% Tween-20, were probed with mouse monoclonal anti-β actin antibody (antibody dilution 1:5000) (A5316 Sigma, MO, USA), rabbit polyclonal anti-VEGF anti-NOS-2 antibodies (antibodies dilution 1:200) (sc-152, sc-651, respectively, both purchased by Santa Cruz biotechnology, CA, USA), mouse monoclonal anti-HIF-1α, anti-MMP-9, anti-MMP-2, anti-NOS-1 antibodies (antibodies dilution 1:200) (sc-5354, sc-393859, sc-13595, sc-5302, respectively, all purchased by Santa Cruz biotechnology, CA, USA), then incubated in the presence of specific enzyme conjugated IgG horseradish peroxidase. Immunoreactive bands were detected by ECL system (Amersham Int., Buckunghamshire, UK) and analyzed by densitometry. Densitometric values, expressed as Integrated Optical Intensity (IOI), were estimated in a CHEMIDOC XRS system by the QuantiOne 1-D analysis software (BIORAD, Richmond, CA, USA). Values obtained were normalized based on densitometric values of loading control β-actin.
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5

Western Blot Analysis of BSPII

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DPSC lysates (20 μg/sample) were electrophoresed on a 4–20% SDS-PAGE gel (ExpressPlus™ 10x8, GenScript Biotech Corporation, China) and transferred to nitrocellulose membranes further blocked in 5% of nonfat milk, 10 mmol/l Tris pH 7.5, 100 mM NaCl, and 0.1% Tween 20. Membranes were then probed for mouse anti-β-actin monoclonal antibody (Sigma-Aldrich, St. Louis, MO, USA) (primary antibody dilution 1 : 10,000) and mouse monoclonal anti-BSP II (Santa Cruz Biotechnology, CA, USA) (primary antibody dilution 1 : 200) and incubated in the presence of specific conjugated IgG horseradish peroxidase. Immunoreactive bands were identified using the ECL detection system (Amersham Int., Buckinghamshire, UK) and analyzed by densitometry. Densitometric values, expressed as the percentage of the integrated optical intensity ratio of BSP II and β-actin, were estimated by the ChemiDoc XRS system using the QuantiOne 1-D analysis software (Bio-Rad, Richmond, CA, USA).
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6

Western Blot Quantification of Signaling Proteins

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Cells lysates (20 μg) were electrophoresed and transferred to nitrocellulose membranes. Nitrocellulose membranes were then blocked in 5% non-fat milk or 5% BSA, 10 mmol/l Tris-HCl pH 7.5, 100 mmol/l NaCl, 0.1% Tween-20, and probed with the following primary antibodies (work dilution 1:1,000): CREB, pCREB, pATF1, pHistone H2A.X (all purchased from Cell Signaling Technology, Beverly, MA, USA); p53, NF-κB, Bcl-2, pcdc2, caspase-3, PARP (all purchased from Santa Cruz Biotechnology, Santa Cruz, CA, USA); β-actin and β-tubulin (purchased from Sigma-Aldrich), and incubated in the presence of specific enzyme conjugated IgG horseradish peroxidase. Immunoreactive bands were identified using the ECL detection system (Amersham International, Buckinghamshire, UK) and analysed with densitometry. Densitometric values, expressed as integrated optical intensity (IOI), were estimated in the ChemiDoc XRS system using Quanti One 1-D analysis software (Bio-Rad Laboratories, Richmond, CA, USA). Values obtained were normalized based on densitometric values of internal β-actin or β-tubulin. Statistical analysis was performed using the analysis of variance (ANOVA). Results are expressed as means ± SD. Values of p<0.05 were considered statistically significant.
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7

Western Blot Analysis of Bax and Cyt C

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The western blowing analysis of Bax and Cyt C was carried out as previously reported [59 (link)]. Specifically, CTX-TNA2 lysates (20 µg) were boiled fof 5 min in sample buffer, made of tris-HCl pH 6.8, glycerol, 2-mercaptoethanol, SDS and bromophenol blue. They were then electrophoresed and transferred to nitrocellulose membranes. Nitrocellulose membranes then were blocked in 5% non-fat milk, 10 mmol/L Tris pH7.5, 100 mmol/L NaCl, 0.1 % Tween 20, probed with mouse monoclonal anti-β-tubulin antibody (cat. number T4026, 1:1000; Sigma-Aldrich, St. Louis, MO, USA), mouse monoclonal anti-Bax antibody (cat. number sc-7480, 1:200), mouse monoclonal anti-cytochrome c antibody (cat. number sc-13156, 1:200) (both from Santa Cruz Biotecnologies, Heidelberg, Germany) and incubated in the presence of specific enzyme conjugated IgG horseradish peroxidase. Immunoreactive bands were identified using the ECL detection system (Euroclone, Pero, Milano, Italy) and analyzed by densitometry. Densitometric values were quantified by the CHEMIDOC XRS system and expressed as Integrated Optical Intensity using the QuantiOne 1-D analysis software (Bio-rad Laboratories, Richmond, CA, USA). Values obtained were normalized on densitometric values of internal β-tubulin. Results are expressed as the mean ± SD.
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