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30 protocols using hygromycin b

1

Recombinant Annexin A2 Production

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Total mRNA from the kidney of a C57BL/6 mouse was reverse transcribed to generate cDNA, and the cDNA encoding annexin A2 was amplified by PCR (forward primer 5’ TTGGATCCTCTACTGTCCACGAAATCC 3’; reverse primer 5’ AAGATATCGTCATCCCCACCACACAGGTA 3’). BamHI and EcoRV restriction sites were introduced, and the cDNA was inserted into the pSecTag2 Hygro B vector (Invitrogen) along with sequence for a thrombin cleavage site. The plasmid was produced using BL21 Escherichia coli (Amersham Pharmacia Biotech Inc.) under ampicillin selection. DNA sequencing at the University of Colorado sequencing core confirmed the proper sequence of the amplified plasmid. Chinese hamster ovary (CHO) cells were then transfected with the plasmid using Lipofectamine 2000 (Invitrogen), and protein was produced under Hygromycin B (Corning Cellgro) selection. The cells were grown in Freestyle CHO media (Invitrogen) supplemented with fetal calf serum and Hygromycin B (Corning Cellgro). The protein was purified using a HiTrap His column (GE), and the purity of the protein was confirmed by SDS PAGE and by Western Blot analysis.
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2

Murine Melanoma Cell Line Cultivation

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The murine melanoma B16ova and B16ovaRevC3 cell lines were kindly provided by Prof. Illidge (Manchester, UK). Both cell lines were maintained in an RPMI-1640 medium supplemented with 10% foetal calf serum, 2 mM l-glutamine, 100 U/ml penicillin and 100 μg/ml streptomycin (Invitrogen, UK), at 37 °C in a humidified atmosphere containing 5% CO2. The medium for B16ovaRevC3 cells was further supplemented with 500 μg/ml hygromycin B (Corning).
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3

MDA-MB-231 Breast Cancer Cell Culture

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MDA-MD-231 breast cancer cells were provided by Dr. Stuart Martin (University of Maryland School of Medicine (UMSOM)). Cells were cultured at 37 °C in a humidified incubator (95% air, 5% CO2) in DMEM supplemented with 10% Fetal Bovine Serum (FBS) 1% of penicillin-streptomycin (1000 units/L), 0.25 mg/ml G418 sulfate (Corning, Manassas, VA), and 0.5 mg/ml hygromycin B (Corning, Manassas, VA).
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4

Immortalization of Human Endothelial Cells

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HEuEC were immortalized by overexpressing hTERT upon infection with retrovirus encoding hTERT cDNA. Retrovirus was generated from canine sarcoma D17 packaging cell line stably transduced with the MoMLV-pBABE-hygro-hTERT vector. Supernatants from this retroviral packaging cell line were collected when cells were 70–80% confluent. Supernatants was centrifuged at 500 × g for 5 min and then filtered through 0.45 μm nylon filter (Corning, #431225). HEuEC cells were seeded in 6-well plates, infected at 50% confluency with 2 ml/well of hTERT-encoding retrovirus containing medium with 8 μg/ml polybrene, and allowed to incubate with the retrovirus for 48 hours. Successfully transduced cells were selected with 100 μg/ml Hygromycin B (Corning, #30240CR) for 14 days. Cells obtained were immortalized and labelled as iHEuEC cells.
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5

Generating Stable TWEAK-expressing B16 Cells

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The pSecTag2A/Hygro expression plasmid (Invitrogen) encoding myc-tagged human soluble TWEAK was constructed and both the vector alone and this plasmid were transfected into B16 cells as described [21 (link)]. Stable B16 transfectants were selected using 400 μg/ml hygromycin B (Corning) and individual clones were screened for TWEAK expression by Western blot analysis using a myc antibody (see below). One control (vector-transfected) and one TWEAK overexpressing cell line were chosen for subsequent analysis (designated V2 and T2, respectively). The pcDNA6/His expression plasmid (Invitrogen) encoding myc-tagged human soluble TWEAK was constructed and transfected in a similar manner as above, but in this case stable vector- or TWEAK plasmid-transfected B16 cells were selected using 10 μg/ml blasticidin (Sigma-Aldrich). Following Western blot screening of individual cell clones, one control (vector-transfected) and one TWEAK overexpressing cell line was chosen for subsequent analysis (designated V1 and T1, respectively).
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6

Cell Lines and Virus Propagation Protocol

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HEK293T cells, Vero cells, BHK cells and HUVEC were purchased from the American Type Culture Collection (ATCC). EA.hy926 cells were purchased from the tissue culture facility at the University of North Carolina at Chapel Hill. 293FT cells were purchased from Thermo Fisher. iSLK.219 cells were a kind gift from Don Ganem. HEK293T cells, Vero cells, BHK cells, 293FT cells, and EA.hy926 cells were maintained in Dulbecco’s minimal essential medium (DMEM) (Corning) containing 10% fetal bovine serum (FBS) (Sigma) and 1% penicillin-streptomycin (Pen-Strep) (Corning). HUVEC were maintained in EGM-2 supplied with growth factors obtained from the EGM-2 Bullet kit (Lonza). iSLK.219 cells were maintained in DMEM containing 10% tetracycline (Tet)-free FBS (Sigma), 1% Pen-Strep, 10 μg/ml puromycin (Corning), 50 μg/ml Geneticin (Corning), and 100 μg/ml hygromycin B (Corning). All cells were maintained at 37°C in a 5% CO2 laboratory incubator which was subject to routine cleaning and decontamination. HSV-1 (KOS strain) was obtained from ATCC and propagated in Vero cells. VSV was a kind gift from Doug Lyles and was propagated in BHK cells. KSHV was purified form iSLK.219 cells in our lab.
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7

Cell Culture Conditions for Diverse Cell Lines

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iSLK.219 cells (a kind gift from Dr. Don Ganem) were maintained in DMEM medium (Corning) containing 10% tetracycline (Tet)-free FBS (Sigma), 1% Pen-Strep (Corning), 10 μg/ml puromycin (Corning), 250 μg/ml Geneticin (Corning), and 400 μg/ml hygromycin B (Corning). BCBL1-TREx-RTA cells (a kind gift from Dr. Jae Jung) were cultured in RPMI 1640 (Corning) medium supplemented with 10% tetracycline (Tet)-free FBS, 1% Pen-Strep, 1% L-glutamine, 1% sodium bicarbonate, 0.05 mM β-mercaptoethanol, and 20 μg/ml hygromycin. 293FT (Thermo Fisher, R7007) were maintained in DMEM medium containing 10% FBS (Millipore) and 1% Pen-Strep. All cells were maintained at 37°C in a 5% CO2 laboratory incubator subject to routine cleaning and decontamination.
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8

Comprehensive Signaling Pathway Analysis

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Antibodies recognizing pan-AKT, p-AKT (S473), GSK3β, p-GSK3β (S9), TSC2, p-TSC2 (T1462), S6K, p-S6K (T389), S6, p-S6 (S235/6), PRAS40, ULK1, Rag A, Rag B, Rag C, AMPK, cleaved PARP, and Mcl-1 were from Cell Signaling Technology. β-tubulin antibody was from Sigma-Aldrich. XPB (TFIIH p89 S-19), p53, c-Myc, and GFP antibodies were from Santa Cruz. puromycin antibody was from KeraFAST. REDD1/DDIT4 antibodies were from Novus and Bethyl. C-FLIP antibody was from Enzo Life Sciences. All antibodies were used at final concentrations of 1:1000 – 1:2000 except for cleaved PARP, c-Myc, p-TSC2, ULK1, and XPB (1:500), AMPK, P70S6K, and TSC2 (1:750), and β-tubulin, S6, and p-S6 (1:4000). DMSO, cycloheximide, puromycin, rapamycin, bafilomycin A1, and MG-132 were from Sigma-Aldrich. Hygromycin B was from Corning. Hexadecylsulfonylfluoride (HDSF) was from Santa Cruz. TW-37 was from Selleckchem. Torin1 was a kind gift from David Sabatini and Nathanael Gray. Smac mimetic was a kind gift from Xiaodong Wang.
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9

Generating Stable CHO Cell Lines

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Purified, endotoxin-free plasmid DNA carrying different constructs in pTRE2hyg vector or its derivatives were transfected into CHO-K1 cells (Clontech) with FuGene HD transfection reagent (Promega, Madison, WI, USA, cat# E2311) according to the manufacturer. Two days post-transfection, selection of stably transfected cell lines was started in DMEM low glucose medium (Biosera, Nuaille, France, cat# LM-D1102/500) supplemented with 10% tetracycline-free fetal bovine serum (Biosera, cat# FB-1001T) and 250 µg/mL hygromycin B (Corning, NY, USA, cat# 30-240-CR). The selection was continued for 2–3 weeks with frequent changes in the selection medium until distinct colonies could be visualized. In order to minimize the integration site-dependent differences in the expression of the transgenes, several thousand independent stable transfected colonies were pooled and maintained as a stock cell line. Expression of the transgenes was induced with 1.5 µg/mL doxycycline (Clontech, cat# 631311). Mammalian cells were kept at 37 °C humidified incubator in the presence of 5% CO2.
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10

GHSR Activity Assay Using Tango β-Arrestin Recruitment

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GHSR activity was examined using the Tango β-arrestin recruitment assay that was developed by B.L. Roth (89 (link)). HTLA cells stably expressing a tTA-dependent luciferase reporter and a β-arrestin2-TEV fusion gene were a gift from B.L. Roth (University of North Carolina, Chapel Hill, North Carolina, USA). HTLA cells were maintained in DMEM with 10% FBS (Thermo Fisher Scientific), 100 U/mL penicillin/100 μg/mL streptomycin (Thermo Fisher Scientific), 2 μg/mL puromycin (Tocris Bioscience), and 100 μg/mL hygromycin B (Corning) at 37°C with 5% CO2. Cells were transfected with a GHSR-Tango plasmid expressing human GHSR and a vasopressin receptor (V2) tail (66293, Addgene) using the calcium-phosphate method and maintained for 24 hours prior to the next step. Transfected cells were transferred into a poly-D-lysine–coated 96-well plate (Corning) and maintained for 24 hours before treatment. Cells were then treated with an appropriate amount of human ghrelin peptide (Phoenix Pharmaceuticals, 031-30), LEAP2 peptide (Phoenix Pharmaceuticals, 075-40), or combinations of the 2 (LEAP2 was added 2 hours prior to ghrelin) at different ratios and doses for 24 hours to allow the expression of luciferase. Treated cells were incubated with Bright-Glo Luciferase Assay solution (Promega, E2610), and the signal was detected using a Biotek Neo2 microplate reader.
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