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16 protocols using ab52757

1

Generating Plasmid Constructs for HSF1 and SELENOF Promoter Studies

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A PCR-based method was used to generate all plasmid constructs used in this study. Sequence encoding full-length human HSF1 CDS (NM_005526), and a series of deletion derivatives from SELENOF gene 5′-flanking region sequences were amplified by PCR using human gDNA extracted from HEK293T as templates. HSF1 was inserted into the pcDNA3.1-Myc for overexpression in eukaryotic cells. The 5′-flanking region (from −2055 to +909) deletion derivatives were inserted into the pGL4.10-Luc2 luciferase vector for Dual-Glo Luciferase assay. All constructs were verified by sequencing.
Primary antibody for anti-HSF1 was purchased from abcam (ab52757), anti-myc-tag was purchased from Cell Signaling Technology (2276), anti-HA-tag was purchased from TransGen biotech (HT301-01), and anti- glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was purchased from Abways (AB0036). Goat Anti-Rabbit IgG-HRP secondary antibodies were purchased from Abmart (M21002).
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2

Colorectal Cancer Cell Line Culture

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Human CRC cell lines SW480, SW620, DLD1, RKO were obtained from the American Type Culture Collection (ATCC). All cells were routinely cultured in RPMI 1640 (Invitrogen; 11875–093) or DMEM (Invitrogen; 11965–092) supplemented with 10% fetal bovine serum. All cells were incubated at 37 °C with 5% CO2 and 95% humidity. The following antibodies were used for western blotting and IHC: HSF1 (12972S, Cell Signaling Technology, CST; ab52757, Abcam); β-catenin (8480S, CST); β-actin (4970 L, CST); FLAG (F1804–1, Sigma); cyclinD1 (ab134175, Abcam); Cleaved PARP1 (9541-s, CST); METTL3 (a8370, Abclonal); GLS1 (ap8809b, Abgent). Pyrvinium (P0027), LiCl (793620), cycloheximide (R750107), chloroquine (C6628), MG132 (474790) and PD150606 (D5946) were purchased from Sigma-Aldrich.
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3

Radiation-Induced Myocardial Protein Analysis

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The frozen myocardial tissue from Days 1, 7, 14, and 28 after radiation was weighed at 20 mg, added to 200 μL of tissue lysis solution (1:100 with protease inhibitor), homogenized in 60 Hz 10 times (45 s each time, interval 15 s), and centrifugated at 12,000 r in 4 °C for 15 min. The supernatant was collected as total protein solution. The concentration of protein solution was measured using the BCA method, and the loading buffer and protein solution (4:1) were mixed and then denatured at 95 °C for 10 min. After the gel preparation, electrophoresis, membrane transfer, and closure, the anti-JNK (Rabbit, Abcam, ab179461, Cambridge, UK), anti-p-JNK (Rabbit, Abcam, ab219584, Cambridge, UK), anti-NFATc4 (Rabbit, Abcam, ab3447, Cambridge, UK), anti-HSF1(Rabbit, Abcam, ab52757, Cambridge, UK) (diluted to 1:1000 with TBST), and anti-GAPDH (Rabbit, Abcam, ab9485, Cambridge, UK) (diluted to 1:10,000 with TBST) were added to the PVDF membranes and incubated overnight at 4 °C with slow shaking. The next day, the PVDF membranes were washed 3 × 10 min with TBST, added to HRP-labeled secondary antibody IgG (Abclonal, Boston, USA) (diluted to 1:10,000 with TBST), shaken slowly at room temperature for 1 h, and washed with TBST for 3 × 10 min. The targeted proteins were detected by enhanced chemiluminescence (ECL), calculated by Image J.
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4

Immunoprecipitation of CFTR and HSF1

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For each immunoprecipitation (IP), 1 mg of total protein was used. CFTR IP was performed as previously described [118] (link). For HSF1 IP, cells were lysed in 20 mM Tris-HCl pH 7.4, 130 mM NaCl, 10 mM Na2MoO4, 1 mM EDTA, 5 µM ATP, 0.5% NP-40, and 2 mg/ml of complete protease inhibitor cocktail. Lysates were incubated with 3 µl of HSF1 antibody (Abcam, ab52757) for 18 h, and complexes were recovered with 30 µl of γ-bind beads incubated at 4°C for 90 min. The beads were washed three times with lysis buffer and eluted with 10% SDS and 20% Tris-HCl pH 6.8.
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5

Chromatin Immunoprecipitation of HSF1

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A549 and A549-taxolR cells were fixed, nuclei were isolated, and chromatin was sheared by sonication using the ChIP Kit according to the manufacturer’s instructions (ab500; Abcam). The sheared chromatin was immunoprecipitated using HSF1 antibody (ab-52757; Abcam) and IgG (ab500; Abcam). Details regarding the primers used in ChIP-qPCR can be found in Supplementary Table S2. The quantitative PCR conditions were as follows: 10 min at 95 °C, followed by 38 cycles of denaturation (5 s at 95 °C), annealing (10 s at 62 °C), and extension (20 s at 72 °C) with single acquisition of fluorescence at the end of each extension step. ChIP-qPCR was calculated as follows: fold enrichment = 2−((Ct IP)−(Ct mock)). Mean values of three biological replicates were calculated. Statistical analysis was carried out using one-way ANOVA.
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6

Cell Lysate Protein Extraction and Quantification

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Cell lysates were obtained as previously described [23 (link)]. Total protein was extracted with cell lysis buffer (KeyGene, Nanjing, China), and protein concentration was quantified using an Enhanced BCA Protein Assay Kit (KeyGene, Nanjing, China). The primary antibodies used were as follows: anti-HSF1 ((1:100, ab52757, Abcam, USA) and anti-GAPDH (Proteintech, Wuhan, China).
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7

Immunohistochemical Detection of HSF1

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Paraffin blocks were dewaxed and incubated with 3% H2O2 at room temperature for 5–10 min. The samples were then sealed with 5–10% normal goat serum (diluted with PBS) and incubated at room temperature for 10 min. The samples were sequentially incubated with a primary antibody targeting HSF1 (Abcam, ab52757) at 37 ℃ for 1 h followed by a working solution containing streptavidin labeled with horseradish or alkaline phosphatase at 37 ℃ for 10–30 min, and the chromogenic agent DAB was applied for 3–5 min.
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8

Cell Culture and Western Blot

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SW480 and HCT116 was obtained from the American Type Culture Collection (ATCC). SW480 was cultured in L-15 medium (GENOM, GNM41300) supplemented with 10% bovine serum at 37°C without CO2. HCT116 was cultured in McCOY’s 5A medium (GENOM, GNM16600) supplemented with 10% bovine serum at 37°C with 5% CO2. The following antibodies were used for Western blot and CO-IP: HSF1 (ab52757, Abcam), β-actin (4970 L, CST), Flag (F1804, Sigma), β-catenin (8480S, CST), HuR (Abcam, ab200342). JQ1(S7110) and I-BET-762 (S7189) was purchased from Selleck.
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9

HSF1 Expression Quantification in GC Tissues

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Paraffin-embedded GC tissues were obtained from the Department of Pathology and made into tissues microarrays for IHC staining. IHC staining was conducted as previously described [23 (link)]. The anti-HSF1 antibody (1:100, ab52757, Abcam, USA) was detected by IHC. We semi-quantitatively scored the expression levels of HSF1 according to the method used in our previous studies [24 (link)], with slight modifications. The extent of HSF1 staining was scored by assigning the percentage of positive tumour cells (0, none; 1, < 20% of positively staining cells; 2, 20–50% of positively staining cells; 3, > 50% of positively staining cells). Low HSF1 expression was referred to as the IHC score 0 and 1, and high HSF1 expression was referred to as the IHC score 3 and 2. Immunohistochemical evaluation was performed by two pathologists who were blind to the clinical and pathological characteristics associated with the specimens.
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10

HSF1 Binding to EOGT Promoter

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Chromatin immunoprecipitation (ChIP) assay was used to detect the binding relationship between HSF1 and EOGT promoter. Cells were fixed with 1 % formaldehyde solution for 10 min and quenched with 125 mM glycine for 5 min, and DNAs were fragmented into 200 to 500 bp length fragments by sonication. The cell lysates were then incubated with anti-HSF1 (Abcam; 1:50, ab52757) or anti-IgG (Abcam; 1:1000, ab171870) at 4°C overnight. DNA was enriched and subjected to gel electrophoresis analysis.
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