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Sybr green qpcr mix

Manufactured by Transgene
Sourced in China

SYBR Green qPCR Mix is a ready-to-use solution for quantitative real-time PCR (qPCR) analysis. It contains SYBR Green I dye, which binds to double-stranded DNA, allowing for the detection and quantification of DNA targets. The mix also includes all the necessary components for qPCR, including DNA polymerase, dNTPs, and buffer.

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8 protocols using sybr green qpcr mix

1

Total RNA Extraction and RT-qPCR Protocol

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Total RNA from cells were isolated by 1 mL TRIZOL reagent (TaKaRa, Tokyo, Japan). Cells after washing with PBS were lysed in Trizol. Then, 200 μL trichloromethane, 550 μL isopropyl alcohol, and 1 mL 75% ethanol was added in turn, and 12,000 rpm centrifuge is required after each addition. Next, the 1 μg RNA was reversely transcribed into cDNA by using 4 μL HiScript III RT SuperMix for qPCR (+1 μL gDNA wiper) (Vazyme, Nanjing, China). Finally, RT-qPCR experiments were performed with 3-step amplification program (95 °C 10s, 60 °C 10s, 72 °C 10s) by using 2x SYBR Green qPCR Mix (TransGen Biotech, Beijing, China) with LightCycler® 96 (Roche, Basel, Switzerland). The quantitative calculation analysis of relative gene expression could be determined by 2−ΔΔCt method. Experiments were performed in triplicate.
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2

RNA Extraction and qPCR Analysis

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The total RNA was collected and purified from cells or spleen tissue using TRIZOL reagent (TaKaRa, Tokyo, Japan) according to the manufacturer's protocol. RNA concentrations were measured using NANODROP ONE (Thermo Fisher Scientific). RNA was reversely transcribed into complementary DNA (cDNA) using HiScript III RT SuperMix for qPCR (+gDNA wiper) (TransGen Biotech, China) with a PCR Instrument (BIO‐RAD), and then quantified by qPCR using 2x SYBR Green qPCR Mix (TransGen Biotech, China) with LightCycler 96 (Roche). Relative gene expression folding changes were identified with the 2–ΔΔCt method. The qPCR primers for all the experiments are listed in Table S4, Supporting Information.
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3

Quantifying Viral RNA and ISGs

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Total RNA from cells or cell supernatants were extracted with the PureLink RNA Extraction kit (Thermo Fisher Scientific). Viral RNA copies were measured by qRT-PCR [48 (link)] with the One Step PrimeScript RT-PCR kit (Takara). ZIKV primers and TaqMan probes were described previously [49 (link)]. SYBR Green qPCR mix (TransGen Biotech, Beijing) was used to quantify the mRNA level of the ISGs. Primers used in this study are listed in Additional file 1: Table S1.
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4

Quantifying Gene Expression via qRT-PCR

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Total RNA was separated from each sample using TRIzol regent (Invitrogen, Carlsbad, CA, USA) and the cDNA was synthesized using a cDNA Synthesis SuperMix Kit (TransGen, Beijing, China) according to the manufacturer’s instructions. Gene expression for three replicates was determined using qRT-PCR using SYBR Green qPCR Mix (TransGen, Beijing, China). The OsUFC1 [40 (link)] was utilized as the endogenous control for normalization. The following standard thermal profile was used for qRT-PCR: 95 °C for 3 min; 40 cycles of 95 °C for 10 s; 60 °C for 15 s; 72 °C for 20 s.
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5

RNA Extraction and qPCR Analysis in Mice

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Total RNA was extracted from mice tissues using TRIzol reagent (TaKaRa, Dalian, China). RNA purity and concentration were determined by optical density measurement at 260 nm on a spectrophotometer (IMPLEN, Germany). Then, RNA was reversely transcribed to cDNA using an iScript cDNA synthesis kit (TIANGEN, Beijing, China). qPCR was performed SYBR Green qPCR Mix (TransGen Biotech) according to the manufacturer's instructions. The results were normalized to GAPDH. Primers are listed in Table S1.
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6

RNA Extraction and Quantification via RT-PCR

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Total RNA was isolated using the TRIzol reagent. cDNA was synthesized using a First-Strand cDNA Synthesis Kit (Invitrogen). The relative mRNA expression was analysed via RT-PCR using SYBR Green qPCR Mix (TransGen Biotech, Beijing, China). PCR conditions were as follows: 95°C for 10 min, 40 cycles of 95°C for 15 s, 60°C for 60 s, 95°C for 15 s, and 60°C for 15 s. A Roche LightCycler 480 Instrument II (Roche, Indianapolis, USA) was used for real-time quantitative fluorescence analysis with a two-step method.
GAPDH and
U6 nuclear RNA were used as internal controls. The primers used in this study are listed in
Table 1.
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7

Quantification of NTS Gene Expression

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According to our previous study (Wu et al., 2016 (link)), the tissues of NTS were collected by punching. The tissue from a single rat was recorded as one sample. Total RNA of NTS tissue was extracted with TransZol UP reagent (TransGen Biotech, China), and then RNA was reverse-transcribed to cDNA using a reverse transcription kit (TransGen Biotech, China). The cDNA was amplified by SYBR Green qPCR Mix (TransGen Biotech, China). Quantitative PCR amplification was performed on LightCycler96 Instrument (Roche, United States) using the two-step PCR amplification standard program. The relative expression was calculated by the 2−ΔΔCt method and normalized to GAPDH. The primer sequences used in present study are shown below. GAPDH: Forward primer GACATGCCGCCTGGAGAAAC, Reverse primer AGCCCAGGATGCCCTTTAGT; AT1R: Forward primer GCCAAAGTCACCTGCATCAT, Reverse primer AATTTTTTCCCCAGAAAGCC.
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8

Quantitative gene expression analysis in rice

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The total RNA was extracted using TRIzol reagent (Invitrogen), and then treated with RNase-free DNase I (Invitrogen) according to the manufacturer’s protocol. The RNA was reverse-transcribed using a cDNA synthesis kit (TRANSGEN). Quantitative real-time PCR (qRT-PCR) was performed from cDNA using SYBR Green qPCR mix (TRANSGEN, AQ101) following the manufacturer’s instructions on an Applied Biosystems 7900HT Fast Real-Time PCR System. Fold changes were calculated using the ∆Ct method, each assay was replicated by at least three time with three biological replicates (independent RNA preparations). The rice Actin3 (LOC_Os03g61970) was used as a reference. Relevant primer sequences were given in Supplementary Data 6.
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