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Cleaved parp 1

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Cleaved PARP-1 is a protein fragment produced by the cleavage of Poly(ADP-ribose) Polymerase-1 (PARP-1) enzyme. PARP-1 is a protein involved in various cellular processes, including DNA repair, programmed cell death, and transcriptional regulation. Cleavage of PARP-1 is a hallmark of apoptosis, or programmed cell death, and the detection of cleaved PARP-1 can be used as a marker for this process.

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12 protocols using cleaved parp 1

1

Osteoclast Protein Phosphorylation Profiling

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To study phosphorylation and expression of proteins in osteoclasts, BMMs were induced with RANKL for different time points as described in the figures and the total cell lysates were prepared in cell lysis buffer (Cell Signaling Technology, Danvers, MA, USA). Protein concentration was determined and equal amount of protein was applied onto SDS-PAGE. After the transfer, membranes were blocked in 5% skimmed milk for 1 h at room temperature, followed by probing with specific primary antibody primary antibodies in 5% BSA in PBS-Tween (1% v/v) overnight and then washed three times with PBS-Tween (PBST) and probed with secondary antibodies from LI-COR (Odyssey Imager; donkey anti-rabbit/IRDye 800 CW/anti-goat/IRDye 800 CW anti-mouse IRDye 680 CW) for 1 h at room temperature. Membranes were then washed three times with PBST and scanned by using LI-COR Odyssey Imager (LI-COR Biosciences, Lincoln, NE, USA). The RBPJ, NEMO, IKK2, pIκB, IκB and cleaved PARP1 antibodies were purchased form Santa Cruz, Dallas, TX, USA; Cleaved Caspase 3 antibody was purchased from Cell Signaling Technology, Danvers, MA, USA; β-actin was purchased from Sigma, St Louis, MO, USA.
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2

Western Blot Analysis of ER Stress Markers

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The MSCs were lysed using RIPA lysis buffer (Thermo Fisher Scientific, Waltham, MA, USA) to obtain total cellular protein. Cell lysates (20 µg of total protein) were separated on 8–12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), and the proteins were transferred to the nitrocellulose membrane. After the blots had been washed with TBST (10 mM Tris-HCl (pH 7.60), 150 mM NaCl, 0.05% Tween-20), they were blocked with 5% skimmed milk for 1 h and incubated with appropriate primary antibodies at the dilutions recommended by the supplier. Antibodies against GRP78, PERK, p-PERK, eIF2α, p-eIF2α, ATF4, IRE1α, CHOP, p-IRE1α, NF-κB, p-NF-κB, JNK, p-JNK, p38, p-p38, BCL-2, BAX, cleaved caspase-3, cleaved PARP-1, PrPC, MnSOD, and β-actin were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). The membranes were then washed, and primary antibodies were detected using goat anti-rabbit IgG or goat anti-mouse IgG conjugated to horseradish peroxidase (Santa Cruz Biotechnology). The immunoreactive bands were visualized by enhanced chemiluminescence (Amersham Pharmacia Biotech, Little Chalfont, UK).
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3

Immunoblotting Analysis of Cell Signaling

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Whole cell lysates were prepared using RIPA lysis buffer and proteins were detected by immunoblotting using antibodies specific against PP2A A, PP2A C, Phospho-Histone H2AX (S139), MET, pMet (Tyr 1234/1235), Cleaved Caspase 3 and pan-Actin antibodies from CST (City of Industry, CA), Cleaved PARP1 (Santa Cruz Biotechnology, Dallas, TX) and pMET (Ser985) (ThermoFisher Scientific, Waltham, MA) were used as described previously (27 (link)).
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4

Western Blot Analysis of BRCA1 and EMT Markers

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Immunoblotting was performed using the Trans-blot Turbo transfer system (Bio-Rad, Hercules, CA) using PVDF membranes. Membranes were then incubated with anti-BRCA1 (Abcam, Cambidge, MA), Flag antibody (Sigma-Aldrich, St. Louis, MO), V5 tag, E-cadherin, snail, vimentin, or β-catenin (Cell Signaling, Danvers, MA), cleaved PARP1 (Santa Cruz, Dallas, TX) primary antibodies for 16 hr at 4 oC.
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5

Western Blot Analysis of Protein Signaling

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Cells and tissue homogenates were used for protein extraction in lysis buffer. Protein was quantified by bicinchoninic acid assay. Proteins (20 μg protein) were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes for antibody probing. After washing with TBS-T (10 mM Tris-HCl, pH 7.6, 150 mM NaCl, 0.05% Tween-20), the membranes were blocked with 5% bovine serum albumin (BSA) in TBS-T for 1 h and then incubated overnight at 4 °C with primary antibodies specific to HIF-1α, GRP78, Akt, p-Akt, mTOR, p-mTOR, p70S6k, p-p70S6k, CDK2, cyclin E, CDK4, cyclin D1, p-JNK, p-p38, p-NF-κB, BCL2, Bax, cleaved caspase-3, cleaved PARP-1, α-tubulin, and β-actin (Santa Cruz Biotechnology, Dallas, TX, USA). After incubation of the membranes with peroxidase-conjugated secondary antibodies (Santa Cruz Biotechnology) for 1 h at room temperature, protein bands were detected using enhanced chemiluminescence reagent (Amersham Biosciences, Little Chalfont, UK) in a dark room.
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6

Western Blot Analysis of UPR Markers

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The MSC homogenates (20 μg protein) were separated via 8–12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and the proteins were transferred to nitrocellulose. After the blots had been washed with TBST (10 mM Tris-HCl [pH 7.6], 150 mM NaCl, 0.05% Tween-20), the membranes were blocked with 5% skim milk for 1 h and incubated with the appropriate primary antibodies at the dilutions recommended by the supplier. Antibodies against GRP78, PERK, p-PERK, eIF2α, p-eIF2α, ATF4, IRE1α, p-IRE1α, JNK, p-JNK, p38, p-p38, CHOP, BCL-2, Bax, cleaved caspase-3, cleaved PARP-1, Akt, phosphor-Akt, PrPC, α-tubulin, and β-actin were all purchased from Santa Cruz Biotechnology. The membranes were then washed, and the primary antibodies were detected using goat anti-rabbit IgG or goat anti-mouse IgG conjugated to horseradish peroxidase (Santa Cruz Biotechnology). The bands were visualized by enhanced chemiluminescence (Amersham Pharmacia Biotech, England, UK).
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7

Western Blot Analysis of Cellular Signaling

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Western blot from in vivo and in vitro samples were performed according to our previous publication (Liang et al., 2015 (link)). Primary antibodies PTEN, BAMBI, β-actin, α-SMA, CTGF (Abeam, MA), p53, phospho SMAD2/4, total SMAD2/3 (Cell Signaling Technology, MA), phospho STAT3, Cyclin E, cleaved caspase3, total caspase3 and cleaved PARP1 (Santa Cruz biotechnology, Inc. Santa Cruz, CA), were used at recommended dilutions, and compatible horseradish peroxidase-conjugated secondary antibodies were used.
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8

Neuroprotective Effects of Resveratrol in Alzheimer's

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Roswell Park Memorial Institute (RPMI) cell culture medium, FBS, PBS, donor equine serum, trypsin-EDTA and penicillin-streptomycin were obtained from Hyclone Laboratories (Logan, UT, USA). HBSS N2 supplement, fluo-3/AM, CM-H2DCFDA, Hoechst 33342, and pluronic F-127 were purchased from Invitrogen (Carlsbad, CA, USA). Aβ25–35 (synthetic, ≥97% HPLC), MTT, rhodamine123, and resveratrol as a positive control were obtained from Sigma-Aldrich (St. Louis, MO, USA). Specific antibodies and other cell-culture relating assay kits were purchased according to the previous studies [4 (link),45 (link)]. All organic solvents were analytical grade. Antibodies against iNOS, COX-2, TNF-α, cleaved-caspase-9, cleaved-PARP-1, bax, bcl-2, β-actin, monoclonal antibodies, and peroxidase-conjugated secondary antibody were purchased from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). Anti-phospho-JNK, phospho-ERK, phospho-p38, phospho-IκB-α, phospho-p65, and cleaved-caspase-3 monoclonal antibodies were purchased from Cell Signaling Technology Inc. (Beverly, MA, USA).
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9

Protein Expression Analysis by Western Blot

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Total homogenates (20 μg protein) were separated using 8–12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and proteins were transferred to nitrocellulose membranes. The blots were washed with TBST (10 mM Tris-HCl (pH 7.6), 150 mM NaCl, and 0.05% Tween-20), blocked with 5% skim milk for 1 h, and incubated with the appropriate primary antibodies overnight at 4 °C using the dilutions recommended by the supplier. Antibodies specific for HSPA1L, parkin, LC3B, P62, and VDAC1 were purchased from Novus Biological (dilution of 1:1000; Centennial, CO, USA); those specific for BCL2, BAX, cleaved caspase 3, cleaved PARP-1, and β-actin were purchased from Santa Cruz Biotechnology (dilution of 1:500; Dallas, TX, USA). After incubation with primary antibodies, membranes were washed and incubated with goat anti-rabbit IgG (dilution of 1:5000) or goat anti-mouse IgG (dilution of 1:10,000) secondary antibodies conjugated to horseradish peroxidase (Santa Cruz Biotechnology) for 1 h at 25 °C. The bands were then visualized by enhanced chemiluminescence (Amersham Pharmacia Biotech, England, UK).
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10

Protein Characterization in MSG Biopsies

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For protein characterization, extracts from the MSG biopsies were obtained using a lysis buffer (RIPA buffer), and the total protein concentration was measured using the BioRad protein assay (DC Protein Assay, Biorad Laboratories, CA, USA, #500-0116). WB analysis was performed using selective antibodies against substance P (SP, Santa Cruz Biotechnology, Dallas, TX, USA, sc-517213, 1:1000) and its cognate receptor Neurokinin 1 (NK1R, Santa Cruz Biotechnology, Dallas, TX, USA, sc-365091, 1:1000), cleaved PARP-1 (Santa Cruz Biotechnology, Dallas, TX, USA, sc-56196, 1:1000), and phosphorylated JNK (pJNK, cell signaling technology, Danvers, MA, USA, #9251, 1:1000). The images obtained from the WBs were analyzed using ImageJ software for Windows. All samples were normalized for protein loading using β-actin (Santa Cruz Biotechnology, Dallas, TX, USA, sc-47778, 1:10,000) as the protein loading control. The values were determined from the ratio between the arbitrary units (a.u.) derived from the protein band and the respective β-actin band and expressed as mean ± Standard Deviation (SD).
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