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21 protocols using protocatechuic acid

1

Comprehensive Characterization of Bioactive Compounds

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Threonine, glutamic acid, phenylalanine, caffeic acid, hyperoside, ferulic acid, vitexin, quercetin and rutin were supplied by the National Institutes for Food and Drug Control (Beijing, China). p-Coumaric acid, gallic acid, kaempferol 3-O-galactoside, isoschaftoside, schaftoside, isovitexin, astragalin, kaempferol 3-O-rutinoside and syringic acid were purchased from Chengdu Dexter Bio Co. (Chengdu, China). Protocatechuic acid, kaempferol and neochlorogenic acid were acquired from Shanghai yuanye Bio-Technology Co., Ltd. (Shanghai, China). Chlorogenic acid was received from Baoji Chenguang Biotechnology Co., Ltd. (Baoji, China). Isoquercetin was received from Jiangsu Yongjian Pharmaceutical Technology Co. (Taizhou, China). The purity of all compounds was above 98% as determined by high-performance liquid chromatography (HPLC). Methanol, formic acid and acetonitrile of HPLC grade were obtained from Merck (Darmstadt, Germany); ultrapure water was prepared using a Milli-Q water purification system (Millipore, Bedford, MA, USA).
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2

Comprehensive Chemical Characterization of QZC

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Methanol and formic acid were purchased from Fisher Scientific (Fair Lawn, NJ, USA). Dimethyl sulfoxide (DMSO) was acquired from Meridian Medical Technologies (MREDA, New York, NY, USA). Water for UHPLC/Q-Orbitrap-MS analysis was purified by the Milli-Q water purification system (Millipore, Billerica, MA, USA). QZC samples were provided by Shaanxi Buchang Pharmaceutical Co., Ltd. (Shaanxi, China). Reference compounds were obtained from Shanghai Yuanye Bio-Technology Co., Ltd. (Shanghai, China), including gallic acid, protocatechuic acid, neochlorogenic acid, chlorogenic acid, cryptochlorogenic acid, loganic acid, corilagin, loganin, isochlorogenic acids A−C, angelol A, columbianetin acetate, osthole, columbianadin, akebia saponin D, 5-hydroxymethyl furfural, 4-hydroxybenzoic acid, caffeic acid, hydroxysafflor yellow A, syringin, ferulic acid, secoxyloganin, ellagic acid, columbianetin, angelol G, and isoimperatorin. Benzoylmesaconine, benzoylaconine, and benzoylhypaconine were obtained from Shanghai Acmec Biochemical Co., Ltd. (Shanghai, China). Kaempferol-3-O-rutinoside was obtained from Chengdu Pufei De Biotech Co., Ltd. (Chengdu, China). The purities of these reference compounds were all determined to be above 98% by UPLC analysis.
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3

Quantitative Analysis of Botanical Compounds

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The standard compounds (i.e., geniposide, genipin, shanzhiside, geniposidic acid, caffeic acid, chlorogenic acid, neochlorogenic acid, crocin I, crocin II, and isoquercitrin) were procured from Chengdu Push Biotechnology Co., Ltd. (Chengdu, China). Genipin 1-gentiobioside was obtained from Chengdu Desite Biotechnology Co., Ltd. (Chengdu, China), and deacetylasperulosidic acid methyl ester and protocatechuic acid were purchased from Shanghai Yuanye Biotechnology Co., Ltd. (Shanghai, China). The purity of each quantitatively analyzed compound exceeded 98%, with the exception of geniposidic acid (purity ≥ 95%). The chemical structures of all reference standards are presented in Supplementary Figure 1.
LC-MS-grade methanol and acetonitrile were sourced from Merck (Darmstadt, Germany), while formic acid (LC-MS grade) was acquired from Aladdin (California, United States). Ultrapure water was supplied by a Milli-Q system (Millipore, United States). All the other reagents used were of analytical grade.
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4

Investigating Anti-Inflammatory Effects of TCM Formulation

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Dexamethasone was obtained from Beijing Solarbia Technology Co., Ltd. (Beijing, China). IL-6, IL-1β, TNF-α enzyme-linked immunosorbent assay (ELISA) and arginase-1 (Arg-1) ELISA kit was obtained from Shanghai Enzymatic Union Biotechnology Co., Ltd. (Shanghai, China). Inducible nitric oxide synthase (iNOS) and bicinchoninic acid (BCA) protein concentration assay kits were purchased from Nanjing Jiancheng Biological Engineering Institute (Nanjing, China). CD86 polyclonal antibody and CD206 polyclonal antibody were purchased from Proteintech Group, Inc. (Wuhang, China). Poly(I:C) and reference standards of chlorogenic acid, forsythoside A, liquiritin, saikosaponin A, baicalin, arginine, magnolol, protocatechuic acid, 4-hydroxyacetophenone, aristolochic acid A and artemisinin were obtained from Shanghai Yuanye Biotechnology Co., Ltd. (Shanghai, China). All herbs used to prepare QWJR were obtained from Sinopharm Yunnan, Ltd. (Kunming, China).
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5

Chinese Herbal Intervention for Colitis

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All the Chinese herbs were provided by Tongde Hospital of Zhejiang Province (Hangzhou, China). All the chemical standards, including l (+)-arginine, proline, adenine, succinic acid, isoleucine, leucine, gallic acid, phenylalanine, protocatechuic acid, l-tryptophan, protocatechuic aldehyde, neo-mangiferin, chlorogenic acid, caffeic acid, amygdalin, mangiferin, rutin, liquiritin, luteoloside, naringin, berberrubine, baicalin, quercetin, epimedin A, epimedin B, epimedin C, icarrin, isorhamnetin, glycyrrhizic acid, limonin, aaikosaponin A, and 3-N-butyl-4,4-dihydrophthalide, were purchased from Shanghai Yuanye Bio-Technology Co. Ltd (Shanghai, China). Azoxymethane (AOM) was obtained from Sigma-Aldrich (St. Louis, MO, United States) and dextran sodium sulfate (DSS) from MP Biomedicals (Santa Ana, CA United States). TUNEL apoptosis assay kits, radioimmunoprecipitation assay (RIPA) buffer, BCA protein assay kits, and anti-MMP9 antibody (AF5234) were purchased from Beyotime (Beijing, China). Mouse IL-6 and IL-17A ELISA kits were from LiankeBio (Hangzhou, China), and antibodies to p-STAT3 (AF3293), STAT3 (AF6294), NF-κB-p65 (BF8005), Bcl-2 (BF9103), Lamin B (AF5161), and β-actin (T0022) were purchased from Affinity Biosciences (Changzhou, China). Antibodies to IL-17RA (sc-376374) and Bax (sc-20067) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, United States).
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6

Polyphenol Extraction and Antioxidant Evaluation

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Folin-Ciocalteu reagent, 2,2′-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt (ABTS), 2,2′-diphenyl-1-picrylhydrazyl (DPPH), 6-hydroxy-2,5,7,8-tetramethylchromane-2-carboxylic acid (Trolox), 2,4,6-tris(2-pyridyl)-s-triazine (TPTZ), were acquired from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). HPLC and MS grade methanol, and formic acid were purchased from Thermo Fisher Scientific Reagent Co., Ltd. (Waltham, Massachusetts, USA). The polyphenol standards, including caffeic acid, chlorogenic acid, protocatechualdehyde, p-hydroxybenzaldehyde, p-hydroxybenzoic acid, p-coumaric acid, protocatechuic acid, ferulic acid, vanillic acid and rutin, were acquired from Shanghai Yuanye Biotechnology Co., Ltd. (Shanghai, China). All the other regular chemicals, including sodium carbonate (Na2CO3), ferric trichloride (FeCl3), sodium hydroxide (NaOH), aluminum trichloride (AlCl3), sodium nitrite (NaNO2) ethyl acetate and N-hexane, were acquired from Tianjin Deen Chemical Reagent Co., Ltd. (Tianjin, China).
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7

Quantification of Phytochemical Standards

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The standards of procyanidin B2 (5), daidzin (7), dihydroquercetin (8), genistin (9), liquiritigenin (12), calycosin (14), naringenin (15), genistein (16), medicarpin (20), prunetin (21) and biochanin A (22) were purchased from Nanjing Liangwei biotechnology Co., Ltd. (Nanjing, China). Epicatechin (6), rutin (10), kaempferol (17) and formononetin (19) were purchased from the Chinese National Institute for the Control of Pharmaceutical and Biological Products (Beijing, China). Ononin (11), gallocatechin (1), epigallocatechin (3) and isoliquiritigenin (18) were purchased from Chengdu Chroma Biotechnology Co., Ltd. (Chengdu, China). Daidzein (13) and protocatechuic acid (2) were purchased from Shanghai Yuanye Biotechnology Co., Ltd. (Shanghai, China). Catechin (4) was purchased from Baoji Chenguang Biotechnology Co., Ltd. (Baoji, China). The purities of all compounds were greater than 98%, checked by HPLC analysis. The structures of the 22 standards were shown in Figure S1. Formic acid, acetonitrile and methanol of HPLC grade were purchased from Merck (Darmstadt, Germany). Chloroform was HPLC pure and purchased from Shanghai Lingfeng Chemical Reagent Co., Ltd. (Shanghai, China). Ultrapure water was prepared using a Milli–Q water purification system (Millipore, Bedford, MA, USA).
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8

Analytical Techniques for Neuroinflammation

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2,3,5-Triphenyltetrazolium chloride (TTC) and 5-bromo-2′-deoxyuridine (BrdU) were purchased from Sigma Chemical Co. Tanshinol, ferulic acid (FA), baicalin, protocatechuic acid, rosmarinic acid, salvianolic acid B, hydroxysafflor yellow A and 9′-methyl lithospermate B were purchased from Shanghai Yuanye Bio-Technology Co., Ltd. (Shanghai, China). Rabbit monoclonal Bax antibody (#14796s, 1:1000), rabbit monoclonal IL-1β antibody (#12426s, 1:1000), rabbit monoclonal IL-6 antibody (#12912p, 1:1000) were purchased from Cell Signal Technology. Mouse monoclonal TNF antibody (#60291-1-Ig, 1:500), rabbit polyclonal BDNF antibody (#25699-1-AP, 1:200), and mouse β-actin antibody (#60008-1-Ig, 1:4000) were purchased from Proteintech Group, Inc., and rabbit polyclonal Bcl-2 antibody (#bs-0032R, 1:100) was purchased from Bioss (Beijing).
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9

Assessing Antioxidant and α-Glucosidase Inhibitory Activity of Dried FSI

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Dried FSI (sun dried with the water content of 8.0 ± 0.5%) was purchased from Hebei Anguo Yao Yuan Trading Co., Ltd. (Baoding, China). Rutin (RU), quercetin (QU), hyperoside (HY), quercitrin (QI), kaempferol (KA), gentianoside, protocatechuic acid, isorhamnetin, kaempferol-3-O-Rutinoside, narcissoside, chlorogenic acid, 4-nitrophenyl β-D-glucopyranoside (PNPG), acarbose, α-glucosidase (Yeast) (100 U/mg) and all chemicals were obtained from Shanghai Yuan Ye Biological Technology Co., Ltd. (Shanghai, China).
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10

Protocatechuic Acid Alleviates Inflammation

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Protocatechuic acid (≥ 98%) was provided by Shanghai Yuanye Bio-Technology Co., Ltd. (Shanghai, China). LPS (Escherichia coli Serotype O55:B5) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Antibodies against occludin, claudin-1, ZO-1, and corresponding secondary antibodies were purchased from Proteintech Group, Inc. (Chicago, IL, USA). Aureomycin (AUR) and ingredients for basal diet were provided by Hunan Liuyanghe Feedstuff Co., Ltd. (Changsha, Hunan, China).
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