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10 protocols using leibovitz l 15

1

Generation of Soft Tissue Sarcoma Cell Lines

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The panel was composed of commercial and in-house-generated cell lines from patients of soft tissue sarcomas. For the generation of new cell lines, sterile fragments from resected tumors were minced in culture medium and then disaggregated by 1–2 h incubation in collagenase (100 U/ml) at 37°C. After 24 h, the medium was changed to F-10 Ham (Gibco) supplemented with 1% Ultroser G (Biosepra). The cell lines generated were cultured in F-10 Ham supplemented with 1% Ultroser G. A673 cells were cultured in RPMI (Sigma) and SW872 in Leibovitz L-15 (Sigma). All media were supplemented with 10% FBS, fungizone, and penicillin/streptomycin. Once the cells became confluent, adherent cells were removed by trypsin treatment and seeded at 1/2 or 1/3 ratio with medium. Throughout the establishment of these cell lines, their phenotypic features were followed. Additionally, the cell lines were routinely checked for mycoplasma contamination (INVIVOGEN). All cell lines used were established immortal tumor cell lines.
For the newly created human cell lines from resected tumor tissue, approval from local ethics committee at Hospital Universitario Virgen del Rocio (Comite etico de investigacion Hospital Universitario Virgen Del Rocío) was obtained (PI2012-0085) and informed consent was obtained from patients.
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2

Comprehensive Reagents for Cell Analysis

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Chemical reagents including sodium deoxycholate (SDC), sodium lauroyl sarcosine (SLS), Tris-HCl, sodium dodecyl sulfate (SDS), medium of MCDB 153 and Leibovitz L-15, and Tween-20 were purchased from Sigma Aldrich. Protease inhibitor cocktails were obtained from BIOTOOLS. RPMI1640 culture medium, 100 units/ml penicillin, 100 μg/ml streptomycin, and Trypsin-EDTA were bought from Gibco (Thermo Fisher Scientific, Inc). Fetal bovine serum was purchased from Cytiva. Polyvinylidene difluoride (PVDF, 0.45 μm pore size) membranes and enhanced chemiluminescent substrate was gained from PerkinElmer. The primary antibodies against UCH-L3 (12384-1-AP), CYC1 (10242-1-AP), RAC (24072-1-AP), UFM1 (15883-1-AP) were purchased from ProteinTech, while against S100A10 (A13614) and GNG12 (PA529207) were obtained from Abclonal and Invitrogen, respectively. Secondary anti-rabbit HRP-conjugated antibody (RA-BZ202) were obtained from Croyez Bioscience.
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3

Melanoma Cell Line Cultivation Protocols

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Human cutaneous melanoma cell lines (Table 1) were cultivated in “Dulbecco’s Modified Eagle’s Medium” (DMEM) (Sigma-Aldrich Chemie GmbH, Steinheim, Germany), “RPMI-1640 Medium” (Sigma-Aldrich Chemie GmbH, Steinheim, Germany) or tumor medium (TU: 80% MCDB152 (Sigma-Aldrich Chemie GmbH, Steinheim, Germany), 20% Leibovitz L15 (Sigma-Aldrich Chemie GmbH, Steinheim, Germany), 5 µg/mL Insulin, 1.68 mM CaCl2). All media were supplemented with fetal bovine serum (FBS) (Sigma-Aldrich Chemie GmbH, Steinheim, Germany) (DMEM and RPMI 10%, TU 2%), 100 U/mL penicillin and 0.1 mg/mL streptomycin (Sigma-Aldrich Chemie GmbH, Steinheim, Germany). The RPMI-1640 Medium was additionally supplemented with 0.2% sodium bicarbonate. Human fibroblasts (BJ1) were kindly provided by Dr. Ingo Thievessen (Biophysics, Center for Medicine, Physics and Technology, FAU Erlangen-Nürnberg, Erlangen, Germany) and cultivated in DMEM high glucose (4500 mg/L) medium (Sigma-Aldrich Chemie GmbH, Steinheim, Germany). Normal human epidermal melanocytes (NHEM) were obtained from PromoCell (Heidelberg, Germany) and grown in “Melanocyte Growth Medium M2” without phorbol myristate acetate (PromoCell, Heidelberg, Germany). Cells were cultivated at 37 °C in a humidified atmosphere with either 8% or 5% CO2 and split every 2–3 days via trypsinization.
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4

Ethical Procurement of Human Fetal Tissues

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Ethical approval for receipt and use of human fetal tissues was obtained from the South East Scotland Research Ethics Committee (LREC08/S1101/1) and NRES committee North East – Newcastle and North Tyneside 1 (08/H0906/21 + 5) and written and informed consent was provided by the pregnant women. First- and second-trimester human fetal testes (8.5–20 weeks gestation; n = 12) were obtained after medical termination of pregnancy as described previously (Mitchell et al., 2008 (link)). None of the terminations were due to fetal abnormalities. Gestation was determined by ultrasound scan and subsequent direct measurement of foot length. The sex of first trimester testes was confirmed by PCR for the male-specific gene SRY. To permit subsequent gene expression analysis, where possible a small sample of gonad tissue was removed, snap frozen and stored at −70°C until RNA extraction. The remainder was placed immediately into medium containing Leibovitz L-15 with added glutamine, 10% fetal bovine serum, 1% penicillin/streptomycin and 1% non-essential amino acids (all Sigma-Aldrich).
For studies involving animals, specific approval, including ethical approval, was given by the UK Home Office and all procedures were carried out in accordance with the Animal (Scientific procedures) Act 1986.
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5

Melanoma and Prostate Cancer Cell Culture

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The human melanocyte cell line (AG21857) was obtained from the NIA Cell Culture Repository through the Coriell Institute (only used in Fig. 5B). Melanoma cell lines (WM983A and WM983B) were obtained from the Wistar repository through the Coriell Institute. These melanoma cell lines were isolated from the same patient and correspond to VGP primary melanoma (WM983A) and metastatic melanoma (WM983B). The WM983B metastatic melanoma cell line is the main cell line used throughout this study and corresponds to NTF2 low, NTF2 high dox-, and NTF2 high dox +. Anywhere that we refer to VGP primary melanoma we are using the WM983A cell line. The human metastatic prostate cancer cell line (LNCaP) was obtained from Jay Gatlin (University of Wyoming). AG21857 cells were maintained in Medium 254 (#M254500, Invitrogen) supplemented with HMGS (#S0025, Invitrogen). WM983A and WM983B cells were maintained in 4:1 MCDB153 (#M7403, Sigma-Aldrich) and Leibovitz L-15 (#L4386, Sigma-Aldrich), supplemented with 5 µg/ml insulin (#I9278, Sigma-Aldrich), 2% FBS, 1.68 mM CaCl2, and 50 IU/ml penicillin and streptomycin. LNCaP cells were maintained in RPMI-1640 (Sigma) supplemented with 7.5% FBS and 50 IU/ml penicillin and streptomycin. Tet-free FBS was used for experiments where NTF2 expression was induced with doxycycline. All cells were grown at 37 °C and 5% CO2.
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6

Characterization of TNBC Cell Lines

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TNBC cell lines BT20, CAL51, HCC70, HCC1143, HCC1187, HCC1806, HCC1937, Hs578T,
MDA-MB-157, MDA-MB-231 and MDA-MB-468 were obtained from the American Tissue
Culture Collection (Rockville, MD, USA). TNBC cell lines CAL120, CAL851 and
HDQP1 were obtained from the German Tissue Repository DMSZ (Braunschweig,
Germany). All cell lines were tested for mycoplasma and authenticated by short
tandem repeat (STR) typing (Additional File 1). The HCC1143, HCC1187, HCC1806,
HCC1937, Hs578T, MDA-MB-231 and MDA-MB-468 cells were cultured in RPMI
(Sigma-Aldrich) containing 10% foetal calf serum (FCS; Life Technologies); the
HCC70 cells were cultured in RPMI containing 10% FCS, 1 mM sodium pyruvate (Life
Technologies) and 2 mM nonessential amino acids (Life Technologies); the HDQP1
cells were cultured in DMEM (Sigma-Aldrich) containing 10% FCS; the CAL51 cells
were cultured in DMEM containing 10% FCS and 1 mM sodium pyruvate; the CAL120
and CAL851 cells were cultured in DMEM (Sigma-Aldrich) containing 10% FCS, 1 mM
sodium pyruvate and 2 mM glutamine (Life Technologies); the BT20 cells were
cultured in DMEM-HAM F12 (Sigma-Aldrich) containing 10% FCS; the MDA-MB-157
cells were cultured in Leibovitz L15 (Sigma-Aldrich) containing 10% FCS. Cells
were incubated at 37°C and 5% CO2.
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7

Cytotoxicity Evaluation of Docetaxel

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Dulbecco’s modified Eagle medium (DMEM) and fetal bovine serum (FBS) were purchased from Gibco. Leibovitz (L15); streptomycin; penicillin; DMSO; docetaxel; hematoxilin were purchased from Sigma-Aldrich (St. Louis, MO, USA). MTT (3-[4,5-dimethylthiazol-2-yl]-2,5 diphenyltetrazoliumbromide); propidium iodide; Anexina-V cj FITC; Alexa-488 were purchased from Invitrogen. Osmium tetroxide; Spurr resin were purchased from Electron Microscopy Sciences.
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8

Culturing Melanocyte and Prostate Cancer Cells

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The human melanocyte cell line (AG21857) was obtained from the NIA Cell Culture Repository through the Coriell Institute. Melanoma cell lines (WM983A and WM983B) were obtained from the Wistar repository through the Coriell Institute. The human prostate cancer cell line (LNCaP) was obtained from Jay Gatlin (University of Wyoming). AG21875 cells were maintained in Medium 254 (#M254500, Invitrogen) supplemented with HMGS (#S0025, Invitrogen). WM983A and WM983B cells were maintained in 4:1 MCDB153 (#M7403, Sigma-Aldrich) and Leibovitz L-15 (#L4386, Sigma-Aldrich), supplemented with 5 µg/ml insulin (#I9278, Sigma-Aldrich), 2% FBS, 1.68 mM CaCl 2 , and 50 IU/ml penicillin and streptomycin. LNCaP cells were maintained in RPMI-1640 (Sigma) supplemented with 7.5% FBS, and 50 IU/ml penicillin and streptomycin. All cells were grown at 37°C and 5% CO 2 .
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9

Cytotoxicity and AhR Assay in RTL-W1 Cells

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Cytotoxicity and AhR agonist activity were investigated using the permanent cell line RTL-W1 derived from rainbow trout (Oncorhynchus mykiss).[50 (link)] Cells were maintained in 75 cm2 cell culture flasks in L-15 (Leibovitz; Sigma-Aldrich) medium supplemented with 9% fetal bovine serum (FBS; Biowest, Nuaillé, France) and 1% penicillin/streptomycin solution (Pen/Strep, with 10,000 units penicillin and 10 mg streptomycin per ml in 0.9% NaCl; Sigma-Aldrich). RTL-W1 cells were kept in darkness at 20°C. Cells were passaged once a week in a ratio of 1:2 using 1x trypsin/EDTA (Sigma-Aldrich).
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10

Tilapia Lake Virus Isolation and Propagation

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The TiLV strain (VETKU-TV01) was isolated from infected red hybrid tilapia in Pathum Thani province, Thailand in 2016 [30 (link)]. TiLV was propagated in snakehead fish (Ophiocephalus striatus) E-11 cells [74 (link)]. The E-11 cells were purchased from the European Collection of Authenticated Cell Cultures (ECACC #01110916) and maintained in L-15 Leibovitz (Sigma, Cambridge, MA, USA) medium supplemented with foetal bovine serum (Gibco, Paisley, UK) and L-glutamine at 25 °C, without CO2, and without the addition of antibiotics. The titer of TiLV (TCID50/mL) was determined following the protocol described by Reed and Muench [75 (link)]. The cell suspension was centrifuged at 3000× g for 10 min and the supernatant was stored at −80 °C until the challenge test.
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