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10 protocols using mouse m csf

1

Isolation and Co-culture of TAMs, BMDMs, and CD8+ T Cells

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For in vitro co-culture experiments, TAMs (7-AADCD45+CD11b+F4/80+) were isolated from advanced PE tumors using a FACSAria II cell sorter (BD Biosciences). and cultured in DMEM medium supplemented with 10% FBS and 10 ng/mL mouse M-CSF (BioLegend, # 576404). 1x105/well TAMs were seeded onto a 48-well plate and allowed to adhere overnight. Bone marrow-derived macrophages (BMDMs) were obtained from FVB/N mice by modifying previously described protocols (15 (link), 16 (link)). Bone marrow cells were seeded on ultra-low attachment plates (Corning) or petri dishes (Falcon) and cultured in DMEM growth medium (DMEM + 10% FBS + 100 μg/mL penicillin–streptomycin) supplemented with 10 ng/mL mouse M-CSF (BioLegend, # 576404). On day 3, cell culture was top-up with fresh DMEM growth medium (same as original volume) with 10 ng/mL M-CSF. Cells were then incubated for another 4 days before harvesting adherent cells (BMDMs). Mouse CD8+ T cells were isolated from spleens of FVB mice using a mouse CD8+ T cell isolation kit (StemCell, # 19853). CD8+ T cells were cultured alone or co-cultured with TAMs or BMDMs at a ratio of 1:1 in RPMI 1640 supplemented with 10% FBS, 10 ng/mL mouse M-CSF, 0.055 mM 2-mercaptoethanol, 2 ng/mL IL-2 (Peprotech), 2.5 ng/mL IL-7 (Peprotech) and 50 ng/mL IL-15 (Peprotech) for 2 days.
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2

Fungus-Enriched and Macrophage-Enriched RNA-seq

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For fungus-enriched RNA-seq experiments, bone marrow-derived macrophages (BMDMs) were from homogenates of bone marrow from outbred female ICR mice, followed by differentiation in vitro with 20 ng/ml mouse granulocyte-macrophage colony-stimulating factor (GM-CSF) (R&D Systems) in Iscove’s modified Dulbecco’s medium (GE Healthcare) supplemented with 10% fetal bovine serum (Corning) and penicillin-streptomycin (Corning) (complete IMDM). For macrophage-enriched RNA-seq experiments, BMDMs were derived from female C57BL/6 mice and cultured with Dulbecco’s modified Eagle’s medium (high glucose; GE Healthcare) with 10% fetal bovine serum and penicillin-streptomycin (complete DMEM), differentiating with 10 ng/ml mouse M-CSF (BioLegend) for RNA-seq, qRT-PCR, and cytotoxicity assays and 20 ng/ml for ELISA and phagocytosis assays (due to batch variations). J774 cells (ATCC) were cultured in complete DMEM. All mammalian cell incubations were at 37°C, 5% CO2, and all mice were obtained from Envigo.
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3

Isolation and Culture of Mammalian Macrophages

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THP-1 monocytes were purchased from ATCC (TIB-202) and grown in “THP-1 media” consisting of RPMI 1640 (ATCC modification; Thermo, A1049101) supplemented with 10% defined FBS (HyClone, SH30070.03), 1x penicillin/streptomycin (Thermo, 15140-122), and 0.05 mM beta mercaptoethanol (Sigma, M3148). Bone marrow-derived macrophages (BMDM) were cultured from bone marrow of 6 to 10-week-old C57BL/6 mice. Bone marrow cell suspensions from femurs and tibias of C57BL/6 mice were grown for 7 days in non-treated sterile 10 cm plates in “BMDM media” consisting of DMEM/F-12 (Thermo, 10565-018) supplemented with 10% heat-inactivated defined FBS, 1× penicillin/streptomycin, 1× non-essential amino acids (Thermo, 11140-050), and 20 ng mL−1 mouse M-CSF (BioLegend, 576406). Mouse peritoneal and alveolar macrophages were isolated from 6- to 10-week-old C57BL/6 mice50 . Human CD14+ monocytes were purchased from Lonza and grown in RPMI (Sigma, R8758) supplemented with 10% heat-inactivated defined FBS, 1x penicillin/streptomycin and 50 ng mL−1 human recombinant M-CSF (Biolegend, 574804) for 7 days. All cells were incubated in a 5% CO2 incubator at 37 °C unless otherwise noted. All animal experiments were performed in accordance with an approved protocol from the Institutional Animal Care and Use Committee (IACUC) of RIKEN Yokohama Branch.
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4

Isolation and Culture of Mouse Bone Marrow-Derived Macrophages

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Mice were sacrificed and hind legs were removed and placed in conical tubes containing 5% FCS DMEM media (Gibco). Muscle was removed from tibia and femur bones and the ends of bones were cut off. Using a 271/2 gauge needle, 10 mL of sterile DMEM media supplemented with 10% FBS, pen/strep, and L-glutamine was passed through the bone. Cells were pelleted and plated with mouse MCSF (50 ng/mL) (BioLegend). Following 4 days of incubation, supernatant was removed and plated in a new dish. Cells were again incubated in media with mouse MCSF for 3 more days. Dishes were then washed 3 times with sterile PBS to remove unadhered cells. BMDMs were gently scraped off the dish, pelleted, counted, and seeded in new plates for experimentation. In the case of experiments with calcium-free medium, immediately prior to experimentation, cells were washed three times with PBS, before adding calcium-free DMEM (Gibco) with pen/strep and L-glutamine. Controls for calcium-free medium experiment were placed in calcium-sufficient DMEM with pen/strep and L-glutamine. In some experiments, cells were treated with DMOG (200 μM), GsmT×4 (5 μM), Brefeldin-A (3 μg/mL), recombinant EDN1 (conc), Bosentan (10 μM), Cyclosporine A (10 μM), SR 11302 (10 μM), Echinomycin (5 nm), Bapta-AM (10 μM), Chloroquine (100 μM) or MG132 (50 μM)
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5

Generation of Pgam5 Knockout Mice

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Validated Pgam5 gene-targeted ES cells (B6 background: JM8.N4) were purchased from the European Mouse Mutant Cell Repository and chimeric mice were derived by microinjection of ES cells into blastocyst donors. Pgam5 KO mice were generated by breeding chimeric animals (Laboratory Animal Service Program of NCI-Frederick). Pgam5 WT and KO mice were bred and maintained in NIH animal facility at SPF (Specific Pathogen Free) conditions. Mouse experiments were carried out in accordance with NIAID Animal Care and Use Committee guidelines under an approved protocol. 12-month old female mice were used in all the animal study unless specifically indicated. MEF cells were prepared from day 12.5 embryos and cultured in DMEM/F12 full media (FM) (FM: 10% fetal bovine serum, 4 mM L-glutamine, 100 IU ml−1 penicillin, and 100 mg ml−1streptomycin) plus non-essential amino acids. Bone marrow cells were cultured in RPMI FM plus 20 ng ml−1 mouse M-CSF (Biolegend) for 7 days to induce macrophage differentiation. Parl WT and KO MEFs are from Dr. Bart De Strooper (Center for Human Genetics, Flanders Interuniversity Institute for Biotechnology (VIB4) and K.U. Leuven, Leuven, Belgium).
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6

Studying Macrophage Inflammatory Response

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Bone marrow was isolated from WT or miR-146a-/- mice, RBC lysed, and plated in DMEM complete media with 20 ng/mL mouse MCSF (Biolegend). At 4 days of culture, fresh media containing MCSF was added to the cells. At day 7, cells were stimulated with 1 μg/mL LPS (Sigma) for 24 hours. At 24-hours, media was removed and cells were stimulated with a second hit of fresh media containing LPS for an additional 2–6 hours. For Traf6i experiments, cells were pre-incubated with 20 μM Traf6i for 1 hour prior to each LPS stimulation. Protein lysate or RNA was collected using Qiazol/miRNeasy kit (Qiagen) and Western or qRT-PCR was performed on these cells.
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7

Tumor-Macrophage Co-culture Assay

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In total, 5 × 105 mouse KPC PDA tumor cells and 5 × 105 mouse BMDMs were plated at a ratio of 1:1 and seeded into one well of the six-well plate with a macrophage complete medium containing 50 ng/ml mouse M-CSF (Biolegend) and co-cultured for 24 h. Panc10.05 tumor cells and human PBMC derived macrophages were plated at a ratio of 1:1 and seeded into one well of the six-well plate with 100 ng/ml human recombinant M-CSF (M0 and M2 macrophages) (Biolegend) or 100 ng/ml human recombinant GM-CSF (M1 macrophages) (Biolegend) and co-cultured for 48 h. Both tumor-educated macrophages and monocultured macrophages were purified by CD11b+ magnetic microbeads (Miltenyi Biotec) according to the manufacture’s protocol. For the contact and non-contact co-culture, 5 × 105 mouse BMDMs and 5 × 105 mouse KPC PDA tumor cells were co-cultured in the transwell system separated by an 8.0-µm or a 1.0-µm semitransparent membrane (Corning Lifesciences), respectively, for 1 or 3 days.
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8

Evaluating Anti-inflammatory Effects of UroA on BMDMs

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Mouse BMDMs were isolated and cultured from wildtype and Cyp1a1−/− mice. Briefly, mice were euthanized, and bone marrow was procured from tibias and femurs. For differentiation, collected bone marrow cells were plated (2 × 106 cell/ml) in DMEM-high glucose supplemented with 10% FBS, 1% glutamine, 1X penicillin-streptomycin solution, 50 μM β-ME and 100 ng/mL mouse M-CSF (Biolegend) for 7 days. BMDMs were plated in 96 well plate (10,000 cells/well) for ELISA. To evaluate the anti-inflammatory properties of UroA on BMDMs, the cells were stimulated with E. coli-derived lipopolysaccharides (LPS; O55:B5; Sigma) at 50 ng/ml concentration for six hours alone or in combination with different concentrations UroA (0, 10, 25, and 50 μM) in quadruplicates.
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9

ILA Modulates Murine Macrophage Polarization

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Murine BMDMs were differentiated from tibial and femoral bone marrow cells of male mice aged 6 weeks. Cells were cultured in Roswell Park Memorial Institute-1640 (RPMI-1640) medium (Gibco) with 10% fetal bovine serum (FBS, Sigma-Aldrich), 1% penicillin/streptomycin (Gibco), and 30 ng/ml mouse M-CSF (BioLegend) in a humidified atmosphere containing 5% CO2/95% air at 37 °C for 5 days to differentiate to murine BMDMs. Medium was replenished every 2 days. After 5 days, adherent cells containing > 95% CD11b+F4/80+ macrophages were harvested.
Murine BMDMs were first stimulated for inflammatory macrophage differentiation with 100 ng/mL lipopolysaccharide (LPS, Sigma-Aldrich) and then treated with 500 or 1000 μM ILA in the ILA group. In rescue experiments, murine BMDMs were stimulated with 100 ng/mL LPS, 10 μM CH-223191 or 2 μM MK-2206 (an AKT inhibitor, Selleck), and then treated with 500 or 1000 μM ILA.
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10

Generation of Mouse Bone Marrow-Derived Macrophages

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Mouse BMDMs were differentiated from monocytes in the bone marrow. Briefly, femurs and tibias were dissected from both legs of a C57BL/6 mouse, and one end of each bone was cut open with a pair of scissors. Bone marrow was obtained by centrifuging bones with open ends at 2,000g for 30 s. The collected bone marrow was resuspended and cultured in DMEM supplemented with 10% FBS, 100 U ml−1 pen–strep, 2 mM l-glutamine and 100 ng ml−1 mouse M-CSF (BioLegend) for 7 d at 37 °C with 5% CO2 to obtain mouse macrophages. Medium was refreshed on day 4, and before signaling assays, mouse macrophages were starved in growth medium overnight with 2% FBS.
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