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Proteon manager software 3

Manufactured by Bio-Rad

ProteOn Manager software 3.1.0 is a data analysis software designed for use with the ProteOn XPR36 protein interaction array system. The software enables the acquisition, processing, and analysis of data generated from the ProteOn XPR36 instrument.

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4 protocols using proteon manager software 3

1

Kinetic Analysis of VHH-Ricin Interactions

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VHH association and dissociation rates were determined by SPR using a ProteOn XPR36 system (Bio-Rad Inc., Hercules, CA, USA). Ricin was immobilized on a general layer compact (GLC) chip (Bio-Rad Inc.) equilibrated in PBS-0.005% Tween running buffer at a flow rate of 30 µL/min. Following EDAC [N-ethyl-N=-(3-dimethylaminopropyl) carbodiimide hydrochloride] (200 mM)–sulfo-NHS (N-hydroxysulfosuccinimide) (50 mM) activation (3 min), ricin was diluted in 10 mM sodium acetate (pH 5.0) at either 4 µg/mL or 2 µg/mL and coupled for 2 min. A third vertical channel received only acetate buffer and served as a reference channel. The surfaces were deactivated using 1 M ethanolamine for 5 min. A ProteOn array system multichannel module (MCM) was rotated to the horizontal orientation for affinity determination experiments. Each VHH was serially diluted in running buffer and then injected at 50 µL/min for 180 s, followed by 1 to 3 h of dissociation. After each experiment, the chip was regenerated with 10 mM glycine (pH 1.5) at 100 µL/min for 18 s, until the response unit (RU) values had returned to baseline. All kinetic experiments were performed at 25 °C. Kinetic constants for the antibody/ricin interactions were obtained with ProteOn Manager software 3.1.0 (Bio-Rad Inc.) using the Langmuir fit model.
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2

Kinetic Analysis of VHH-Ricin Interactions

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VHH association and dissociation rates were determined by SPR using a ProteOn XPR36 system (Bio-Rad Inc., Hercules, CA, USA). Ricin was immobilized on a general layer compact (GLC) chip (Bio-Rad Inc.) equilibrated in PBS-0.005% Tween running buffer at a flow rate of 30 μL/min. Following EDAC [N-ethyl-N=-(3-dimethylaminopropyl) carbodiimide hydrochloride] (200 mM)-sulfo-NHS (N-hydroxysulfosuccinimide) (50 mM) activation (3 min), ricin was diluted in 10 mM sodium acetate (pH 5.0) at either 4 μg/mL or 2 μg/mL and coupled for 2 min. A third vertical channel received only acetate buffer and served as a reference channel. The surfaces were deactivated using 1 M ethanolamine for 5 min. A ProteOn array system multichannel module (MCM) was rotated to the horizontal orientation for affinity determination experiments. Each VHH was serially diluted in running buffer and then injected at 50 μL/min for 180 s, followed by 1 to 3 h of dissociation. After each experiment, the chip was regenerated with 10 mM glycine (pH 1.5) at 100 μL/min for 18 s, until the response unit (RU) values had returned to baseline. All kinetic experiments were performed at 25 °C. Kinetic constants for the antibody/ricin interactions were obtained with ProteOn Manager software 3.1.0 (Bio-Rad Inc.) using the Langmuir fit model.
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3

Kinetic Analysis of Ricin-Antibody Binding

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mAb association and dissociation rates for ricin toxin were determined by surface plasmon resonance using the Prote0n XPR36 (Bio-Rad Laboratories, Hercules, CA) as described (18 (link)). For ricin immobilization, general layer compact chips were equilibrated in running buffer PBS/0.005% Tween (pH 7.4) at a flow rate of 30 μl/min. Following EDAC (200 mM) sulfo-NHS (50 mM) activation (3 min), ricin was diluted in 10 mM sodium acetate (pH 5) at two different concentrations (4 and 2 μg/ml) and immobilized (2 min). A third vertical channel received only acetate buffer and served as a reference channel. The surfaces were deactivated using 1 M ethanolamine (5 min). The ProteOn multichannel module was then rotated to the horizontal orientation for Ab experiments. Each mAb was serially diluted in running buffer and injected at 50 μl/min for 180 s, followed by 1–3 h of dissociation. After each experiment, the chip surface was regenerated with 10 mM glycine (pH 1.5), each at 100 μl/min for 18 s, until the resonance unit values returned to baseline. All kinetic experiments were performed at 25°C. Kinetic constants for the Ab/ricin interactions were obtained with the ProteON Manager software 3.1.0 (Bio-Rad Laboratories).
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4

SPR Analysis of Ricin Toxin Antibody Kinetics

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MAb association and dissociation rates for ricin toxin was determined by surface plasmon resonance (SPR) using the ProteOn XPR36 (Bio-Rad Inc., Hercules, CA), essentially as described [26 (link)]. For ricin immobilization, general layer compact (GLC) chips were equilibrated in running buffer (PBS-0.005% Tween) at a flow rate of 30 μl/min. Following EDAC (200 mM) sulfo-NHS (50 mM) activation (3 min), ricin was diluted in 10 mM sodium acetate (pH 5.0) at either 4 μg/ml or 2 μg/ml and allowed to be immobilized for 2 min. A third vertical channel received only acetate buffer and served as a reference channel. The surfaces were deactivated using 1M ethanolamine for 5 min. The ProteOn MCM was rotated to the horizontal orientation for affinity determination experiments. Each mAb was serially diluted in running buffer and then injected at 50 μl/min for 180s, followed by 1 to 3 hr of dissociation. After each experiment, the chip regenerated with 10 mM glycine [pH 1.5] at 100 μl/min for 18 s, until the RU values had returned to baseline. All kinetic experiments were performed at 25°C. Kinetic constants for the antibody/ricin interactions were fitted using the Langmuir 1:1 binding model available in the ProteOn Manager software 3.1.0 (Bio-Rad Inc.) [27 (link)].
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