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Dm5500 b microscope system

Manufactured by Leica

The Leica DM5500 B is a high-performance microscope system designed for advanced microscopy applications. It features a modular design, allowing for customization to meet specific research requirements. The microscope system includes various optical modules and accessories to support a wide range of imaging techniques, such as brightfield, darkfield, and fluorescence microscopy.

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3 protocols using dm5500 b microscope system

1

Comprehensive Histological Analysis of Tissue Samples

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haematoxylin and eosin (Sigma-Aldrich) staining was performed by 90 seconds of incubation in haematoxylin followed by 30 seconds of incubation in eosin. Trichrome Masson staining samples were fixed with Bouin’s solution (Sigma-Aldrich) for 15 min at 56°C followed by Wiegerts iron haematoxylin (Sigma-Aldrich) for 5 min, then a Trichrome kit (Sigma-Aldrich) and finally incubated with 1% acetic acid for 2 min. A bright field microscope was used to take 10x & 20x images. Periodic Acid-Schiff reagent (Sigma-Aldrich) was used to preform PAS staining following standard protocols.
Immunofluorescence analyses of cell count were visualized with DAPI (Vector Laboratories Burlingame). Minimum of 60 10x bright field microscopic images (Leica DM5500 B Microscope System) per experimental group were counted for positive expression of DAPI. ImageJ software determined cell count. Immunofluorescence analysis was conducted by 1hr incubation with primary antibodies collagen IVα1/α2, collagen I, fibronectin, PCNA and Bcl-associated X protein (Bax), followed by a 30 min incubation with secondary anti-mouse or anti-rabbit Alexa Fluor 555 (Life Technologies Grand Island, NY, 1:500) See Supplementary Table 2 for antibody dilution. DAPI mounting (Vector Laboratories) was used to visualize samples with a Leica DM5500 B Microscope System.
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2

FGFR3 Gene Copy Number Evaluation

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FGFR3 IHC positive, but FGFR3::TACC3 fusion-negative samples were analyzed with FISH for potential FGFR3 amplification. FFPE slides were hybridized with an IGH/FGFR3 (IGH, immunoglobulin heavy locus) translocation dual fusion FISH probe (Cytocell, Cambridge, UK). FFPE slides were prepared for FISH using protocol as described by Richardson et al.22 (link) To determine FGFR3 gene copy numbers, 50 tumor cell nuclei per tumor were assessed on FGFR3 and IGH gene copy numbers at 100× magnification using a Leica DM5500 B microscope system with Leica application suite advanced fluorescence software (Leica Microsystems, Rijswijk, The Netherlands). An FGFR3-IGH ratio was calculated and defined as <1.5: normal copy numbers, 1.5–2.0: copy number gain, >2: gene amplification.23 (link)
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3

Quantification of FGFR3 Gene Copy-Number in Tumors

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Tissue microarrays were hybridized with an IGH/FGFR3 (IGH, immunoglobulin heavy locus) translocation dual fusion FISH (fluorescence in situ hybridization) probe (Cytocell, Cambridge, UK). In brief, 4 μm TMA slides were deparaffinized, rinsed in HCL solution, and pretreated with citrate and protease buffer. Next, these slides were dehydrated, and incubated with 15 μL Fluorescence in situ hybridization (FISH) probe for 5 min at 78°C. After cooling samples for 5 min, TMA slides were incubated overnight at 37°C in a Thermobrite (Abbott Laboratories, Abbott Park, IL). The next day, TMA slides were rinsed in specific saline‐sodium citrate buffers and counterstained with 4’,6‐diamidino‐2‐phenylindole (DAPI). Finally, slides were dehydrated and 15 μL vectashield was applied. To determine FGFR3 gene copy‐numbers, 50 tumor cell nuclei per tumor were assessed on FGFR3 and IGH gene copy‐numbers at 100× magnification using a Leica DM5500 B microscope system with Leica application suite advanced fluorescence software (Leica Microsystems, Rijswijk, The Netherlands). A FGFR3/IGH ratio was calculated and defined as: <1.5: normal copy‐numbers, 1.5–2.0: copy‐number gain and >2.0: gene amplification 13.
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