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5 protocols using eif4a3

1

Protein Extraction and Western Blot Analysis

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Total proteins of cells and tissues were extracted by lysing in radioimmunoprecipitation assay buffer (RIPA buffer; Beyotime Institute of Biotechnology, Jiangsu, China) on ice for 30 min and then centrifuged at 17,000 × g for 40 min at 4°C. The concentration of protein was determined by a bicinchoninic acid (BCA) assay kit (Beyotime Institute of Biotechnology). An equal amount of protein was separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to polyvinylidene fluoride (PVDF) membranes. Tween 20 with Tris-buffered saline (TTBS) with 10% non-fat milk was used to block the membranes at room temperature for 2 h. Then, membranes were incubated in primary antibody of EIF4A3 (1:500, Proteintech, Rosemont, IL, USA), EGR3 (1:300, Santa Cruz Biotechnology, Santa Cruz, TX, USA), PKP2 (1:200, Santa Cruz Biotechnology, Santa Cruz, TX, USA), PI3K, Akt (1:500, Proteintech, Rosemont, IL, USA), and GAPDH (1:5,000, Proteintech, Rosemont, IL, USA) overnight at 4°C followed by horseradish peroxidase (HRP)-conjugated secondary antibody (1:5,000, Proteintech, Rosemont, IL, USA) at room temperature for 2 h. The blots were visualized with an enhanced chemiluminescence (ECL) kit (Beyotime Institute of Biotechnology) and scanned by ChemImager 5500 v2.03 software.
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2

Protein Expression Analysis Workflow

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Cells were harvested and lysed by 1 × SDS buffer. Lysates were sonicated and centrifuged (13,000 rpm, 4 °C) for 10 min. Proteins were separated by 8–12% SDS-PAGE and transferred to polyvinylidene fluoride membranes (Millipore, Bedford, MA). Membranes were immunoblotted with anti-rabbit NOP58 (1:1000), EIF4A3 (1:1000) (Proteintech, Chicago, USA; Abcam, UK) and anti-mouse LAMC2 (1:500), GAPDH (1:2000) (Abcam, UK; Zsbio, Beijing, China), and then were incubated with hybrid secondary antibody, and the data was collected by FluorChem V2.0 (Alpha Innotech Corp, USA).
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3

Antibody Validation Protocols

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The following primary antibodies were used at the indicated dilutions: Arc (1:250, Santa Cruz, C7), EF2 (1:1000, Santa Cruz Biotechnology, 13004), EF2-p56 (1:1000, Cell Signalling Technologies, 2331), eIF4A3 (1:2500, ProteinTech, 17504-AP), eIF4E (1:1000, Abgent, AM1852a), GAPDH (1:500, Santa Cruz Biotechnology, 25778), Ube3A (1:500, Abgent, AT4445a), Upf1 (1:500, Millipore, 07–1014). Antibody specificity was confirmed by competition with appropriate peptides (results not shown).
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4

Immunohistochemical Analysis of Tumor Samples

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Tumor tissues were fixed in 4% paraformaldehyde and embedded in paraffin. Sections were then processed for H&E and IHC. Primary antibodies specific for Ki-67 (1: 1000, Abcam, USA), caspase 3 (1:100, Abcam, USA), EIF4A3 (1:200, Proteintech, China), OLFML3 (1:500, ThermoFisher Scientific, USA) and ALDH1A3(1: 200, Abcam, USA) were used. All images were recorded with an Olympus BX-51 light microscope.
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5

Antibody Validation and Small Molecule Inhibitors

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The primary antibodies against METTL3 (#86132), AGO2 (#82897), Histone H3K9ac (#9649), Histone H4K5ac (#8647) were purchased from Cell Signaling Technology (Beverly, MA, USA), and antibodies against RNF113A (#27018-1-AP), EIF4A3 (#17504-1-AP), MDM2 (#66511-1-lg), P21 (#10355-1-AP), P53 (#10442-1-AP), HA-Tag (#66006-2-Ig), Flag (#66008-4-lg, #20543-1-AP) were obtained from proteintech (USA). Antibody against GAPDH (ab8245) was obtained from Abcam (Cambridge, UK). HRP-conjugated secondary antibodies, goat-anti-mouse-HRP (AB_2338504) and goat anti-rabbit-HRP (AB_2337938), were bought from Jackson ImmunoResearch. The METTL3 inhibitor STM2457, Chidamide, 5-Azacytidine, Ara-C, and MG132 were purchased from MCE (USA).
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