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Nis element imaging software v 4

Manufactured by Nikon
Sourced in Japan

NIS Element Imaging Software v. 4.40 is a powerful image analysis and processing software developed by Nikon. It provides a comprehensive suite of tools for capturing, analyzing, and managing digital microscope images. The software is designed to work seamlessly with Nikon's advanced microscope systems, enabling researchers and scientists to streamline their imaging workflows.

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2 protocols using nis element imaging software v 4

1

Quantitative Analysis of Protein Expression

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Statistical calculations were performed using GraphPad Prism version 9.5.0 (GraphPad Software Inc., San Diego, United States). Two-way ANOVA followed by Šidák`s correction for multiple comparisons was used for statistical comparisons of tissue bath data, i.e., of concentration-response curves. Statistical significance was regarded for p-values < 0.05. Data are presented as mean ± SEM.
Protein expression was analyzed semi-quantitatively by grading the expression of sGC in each tissue on a scale from 0 to 3 where 0 = no protein expression, 1 = weak protein expression, 2 = moderate protein expression and 3 = strong protein expression. The grading was performed by three blinded evaluators (MW, ED, JS) on images taken with a DS-Fi camera mounted in a Nikon 90i fluorescence microscope (Nikon Corporation, Tokyo, Japan). All images were taken after digital subtraction of background staining measured in corresponding negative controls (i.e., in which the primary antbody was excluded), using the NIS Element Imaging Software v. 4.40 (Nikon Corporation). Each evaluator graded each tissue. Subsequently, a consensus grade was determined for each tissue. Thereafter, the tissues were decoded and a non-parametric statistical calculation was carried out by running a Mann-Whitney rank test.
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2

Quantitative and Qualitative Analysis of Mucosal Inflammation

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Image analysis was performed both quantitatively and qualitatively. The quantitative analysis, to measure the thickness of the mucosa, was performed using the NIS element imaging Software v.4.40 (Nikon Corporation, Tokyo, Japan) by a blinded operator. All images were obtained and analyzed in a similar fashion. IHC images were analyzed qualitatively for mucosal presence of IL-6 and TNF-α. IL-6 and TNF-α were then further analyzed quantitatively using ELISA. Power analysis was performed in G*Power software (Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany; http://www.gpower.hhu.de/). All values are expressed as mean ± S.E.M. Statistical significance was determined by one‐way analysis of variance (ANOVA) followed by a Bonferroni correction for multiple comparisons. P values ≤ 0.05 were regarded as statistically significant. All statistical calculations were performed in the GraphPad Prism 8 software (GraphPad Software Inc., San Diego, CA, USA).
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