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6 protocols using cy5 conjugated goat anti rabbit igg

1

Immunofluorescence Staining of Mouse Retinal Cryosections

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Retinal tissue was obtained from a C57BL/6J mouse (Jackson Laboratories, Bar Harbor, ME), and fixed in 4% paraformaldehyde, cryopreserved in sucrose, then sliced in Optimal Cutting Temperature medium (OCT, Tissue-Tek). The thickness of the retinal cryosections was 16 µm. scFvs, which had been biotinylated in vitro using EZ-Link Sulfo-NHS-LC-LC-Biotin (Thermo Scientific), were used for immunofluorescence staining of cryosections. Detection of immunocomplexes was performed using Cy5-conjugated streptavidin, 1/200 (Invitrogen) or Cy5 conjugated Goat Anti-Rabbit IgG (for positive control; Abcam). Slides were mounted using Vectashield H-1000 medium (Vector Laboratories, Burlingame, CA), and images (20× magnification) obtained by confocal microscopy (Leica DM-IRE2).
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2

Immunofluorescence Staining of CVB3-Infected Cells

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We applied fluorescein-conjugated donkey anti-goat IgG (Chemicon), rhodamine-conjugated donkey anti-mouse IgG (Chemicon), or Cy5-conjugated goat anti-rabbit IgG (Abcam) after an overnight incubation of CVB3-infected Hela cells with primary antibodies. The primary antibodies used were mouse anti-human GM130 (BD Transduction Laboratories), goat anti-human GM130 (Santa Cruze), rabbit anti-human GRASP65 (Thermo Scientific) or mouse antienterovirus VP1 clone 5-D8/1 (Dako). We used DAPI for counterstaining. We analyzed images obtained with an FLUOVIEW FV1000 confocal laser scanning microscope (Olympus) with Olympus FV1000 software.
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3

Quantifying ECM Remodeling in NP Cells

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Human NP cells were seeded on coverslips, exposed to 10 ng/mL IL-1β, and treated with or without 200 nM atuveciclib or transfected with si-CDK9. After 1 or 48 h, cells were fixed with 4% paraformaldehyde for 10 min and washed three times with PBS, followed by permeabilization using 0.1% Triton-X100 for 10 min at room temperature. NP cells were washed three times with PBS again and blocked in 10% goat serum for 1 h before incubation with MMP-13, ADAMTS5, aggrecan, and collagen 2 antibodies (1:200; Abcam) at 4°C overnight. After washing three times with PBS, samples were incubated with Cy5-conjugated goat anti-rabbit IgG (1:200; Abcam) in PBS for 1 h, and then stained with DAPI for 10 min at room temperature (Life Technologies, Carlsbad, CA, United States). Fluorescence signals were imaged using a fluorescence microscope (MODEL BX51TRF; Olympus, Tokyo, Japan).
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4

Analyzing MMP13 and Pol II Ser5P in TNF-α-Stimulated Human NP Cells

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Human NP cells were seeded on coverslips, exposed to 50 ng/ml TNF-ɑ, and treated with or without 50 nM THZ1, 4% paraformaldehyde was used to fix cells for 10 min, 0.1% Triton X-100 permeabilization for 10 min, 10% goat serum block for 1 h, and PBS was used to wash cells three times at intervals before incubation with MMP13 (1:3,000 dilution; ab39012; Abcam), Pol II Ser5P (1:1,000 dilution; ab5408; Abcam) at 4°C overnight. After washing three times with PBS, samples were incubated with Cy5-conjugated goat anti-rabbit IgG or goat anti-mouse IgG (1:200; Abcam) in PBS for 1 h, and then stained with DAPI for 10 min at room temperature (Life Technologies). Fluorescence signals were imaged using a fluorescence microscope (Olympus IX71; Olympus).
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5

Immunofluorescence Assay for Protein Expression

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TMA construction were performed as described previously with refs. [21 (link), 31 (link)]. The TMA glass slides were cleaned with PBS and fixed in 4% paraformaldehyde for 10 min. After 1 h of blocking using 5% BSA (Amresco, OH, USA), the slides were incubated with anti-OTUB2, anti-KRT80, and anti-Ki67 (1:100), accompanied by goat anti-rabbit-Cy5-conjugated IgG (1:100, ZSGB-BIO) (1:100, Abcam) or goat anti-mouse-TRITC-conjugated IgG (1:100, ZSGB-BIO). Following washing, the slides were examined using an automated quantitative pathology imaging system (PerkinElmer, USA). The IF score was determined using the extent and intensity of staining (extent: 0 = no staining, 1 = 0–10%, 2 = 10–50%, and 3 = 50–100%; and intensity: 0 = negative, 1 = weak, 2 = moderate, 3 = solid). The total score was determined as the multiplication of the intensity and extent scores. 0–3 were deemed to be negative expressions. (low); 4–5 were deemed to be a weak expression (low); and 6–12 were considered to be a strong expression (high). The IF score was determined separately by two pathologists who were blinded to the patient characteristics.
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6

Immunofluorescence Imaging of S100A14 and Vinculin

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The cells were grown on glass slides, washed with PBS, and fixed in 4% paraformaldehyde for 10 min. After 1 h blocking with 5% BSA (Amresco, Solon, OH, USA), the slides were incubated with anti-S100A14 (1:100, Proteintech) and anti-Vinculin (1:100, Proteintech) followed by goat anti-mouse-TRITC-conjugated IgG (1:100, ZSGB-BIO) or goat anti-rabbit-Cy5-conjugated IgG (1:100, Abcam). After the slides were washed, they were studied using a confocal fluorescence imaging microscope (LSM780, ZEISS, Göttingen, Germany).
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