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Alexa fluor 488 or 568 phalloidin

Manufactured by Thermo Fisher Scientific

Alexa Fluor 488 or 568 phalloidin are fluorescent dyes used to label and visualize actin filaments in cells. They bind specifically to F-actin, allowing for the detection and analysis of the actin cytoskeleton. These dyes emit fluorescent signals at specific wavelengths, enabling researchers to study the distribution and dynamics of actin in various cell types and biological processes.

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3 protocols using alexa fluor 488 or 568 phalloidin

1

Molecular Profiling of Inner Ear Development

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The inner ear was fixed in 4% para-formaldehyde (PFA) in phosphate-buffered saline (PBS) overnight at 4°C, then the cochlea and vestibule were dissected in DEPC-treated PBS. In-situ hybridisation was performed using Dig-labelled ATOH1 riboprobe (gift from M. A. Basson, Craniofacial Development and Stem Cell Biology, King's College London, London, UK). Antibodies used were: rabbit MYO7A (1:1000, Proteus), rabbit acetylated α-tubulin (1:500, Abnova), rabbit p75NTR (1:500, Abnova), detected with anti-rabbit Alexa Fluor 488 or 568 (1:1000, Invitrogen), mouse NF-M (1:100, Invitrogen), detected with anti-mouse Alexa Fluor 488 or 568 (1:1000, Invitrogen) and Alexa Fluor 488 or 568 Phalloidin (1:1000, Invitrogen).
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2

Immunofluorescence Analysis of Cytoskeletal Proteins

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U2OS cells plated on fibronectin-coated (15μg/ml) coverslip were either pre-extracted in 0.25% paraformaldehyde, PFA (16% stock solution Electron Microscopy Science) and 0.05% triton in cytoskeleton buffer (CB; 10 mM MES 6.1, 138 mM KCl, 3mM MgCl, 2 mM EGTA) for 1 min at 37°C, and fixed in 4% PFA in CB for 20 min, or fixed in 4% PFA in CB for 20 min at 37°C. After fixation, coverslips were permeabilized in 0.5% Triton X-100 in CB for 5 min, free aldehydes were reacted with 100 mM glycine, washed in TBS, and blocked in blocking solution (2% BSA TBS-T) for 1 hr. Cells were incubated with primary antibodies (anti-MARK2 (1:250, Abcam), anti-tubulin DM1A (1:500, Sigma), anti-GM130 (1:500 Cell Signaling), anti-S19-PMRLC (1:200, Cell Signaling), anti-myosin IIA (1:400; Sigma Aldrich,), anti-paxillin (1:500; BD Biosciences, San Jose, CA) or anti-MYPT1 (1:250, Abcam) diluted in blocking solution, washed 3 times 10 min each in TBS-T and then incubated with fluorophore-conjugated secondary antibodies (1:400; Jackson ImmunoResearch Laboratories) and Alexa Fluor 488 or 568 phalloidin (1:400; Invitrogen), washed again and mounted on slides with mounting media (Dako, Pathology Products, Carpinteria, CA), or in TBS supplemented with n-propylgalate for TIRF imaging.
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3

Comprehensive Antibody Panel for Cellular Imaging

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The following primary antibodies were used: polyclonal rabbit anti–αCat (C3236; Cell Signaling), hybridoma mouse anti–αCat (5B11; Daugherty et al., 2014 (link)), monoclonal mouse anti–β-catenin (610154; BD Biosciences), polyclonal rabbit anti–β-catenin (06-734; EMD Millipore), monoclonal mouse anti–E-cadherin (610182; BD Biosciences), monoclonal mouse anti–E-cadherin (HECD1, 13-1700; Takara), polyclonal rabbit anti-GAPDH (FL-335, sc-25778; Santa Cruz), anti–p34-Arc/ARPC2 (07-227; EMD Millipore), monoclonal mouse anti-GAPDH (9484; Abcam), hybridoma mouse anti-tubulin (DM1A, T9026; Sigma-Aldrich), polyclonal rabbit anti-mCherry (5993; BioVision), and Alexa Fluor 488 or 568 phalloidin (A12379; Invitrogen). Secondary antibodies for Western blotting included HRP-conjugated goat anti–mouse and anti–rabbit antibodies (Bio-Rad) or fluorescently labeled donkey anti–mouse and anti–rabbit antibodies (680RD or 800RD; LiCor Biosciences). Secondary antibodies for immunofluorescence included IgG Alexa Fluor 488– or 568–conjugated goat anti–mouse or anti–rabbit antibodies (Invitrogen).
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