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484 protocols using dispase 2

1

Cell Adhesion Fragmentation Assay

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HaCaT cells were grown in 24-well plates. After reaching confluency they were pre-incubated for 1 h with respective mediators, then IgG fractions were added for 24 h. Afterwards, cells were washed with Hank’s balanced salt solution and incubated with dispase II solution (>2.4 U/ml dispase II in Hank’s balanced salt solution, Sigma-Aldrich) for 20 min at 37 °C until the cell monolayer detached from the well bottom. An electric pipette (Eppendorf, Hamburg, Germany) was used to apply a defined mechanical stress by pipetting the monolayer 10 times. The resulting fragmentation of the cell layer, which is an inverse measurement for intercellular adhesion, was automatically analyzed using a self-written ImageJ (National Institutes of Health, Bethesda, MD) macro counting all cell fragments larger than 0.0125 mm². The number of fragments in each experimental condition has been normalized to the DMSO c-IgG value.
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2

Single-Cell Suspension from Spheroids

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Spheroids were digested into single cell suspensions by first pooling (n = 6/condition) spheroids and centrifuging them down at 400× g for 5 min at 4 °C to form pellets. Supernatants were discarded, and the pellets were digested in 1 U/mL Dispase II (Sigma-Aldrich, Dispase II, #D4693) in a 37 °C shaker set to 400 rpm for 30–40 min, followed by gentle pipetting to completely dissociate the remaining cells. The reaction was stopped by adding equal parts ice-cold DPBS. The cell suspension was centrifuged down at 400× g for 5 min at 4 °C, and the supernatant was discarded. The remaining cell pellets were washed with DPBS and were stained for flow cytometry as indicated.
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3

Epidermal and Dermal Tissue Isolation

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Following the sacrifice of the mice, various tissues (large intestine, lung, liver, testis, ovary, brain, spleen, and kidney, small intestine and heart) were collected as previous described (30 (link)). The backs of mice were shaved, the skin was wiped with alcohol prior to its removal, then subcutaneous fat was removed and was cut into small pieces convenient for digestion and separation, and the samples (~0.3 cm) were then incubated in dispase II (2.5 U/ml; Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) at 4°C overnight followed by immersion in DMEM containing 50% (v/v) FBS to inactivate the dispase II. The epidermis and dermis were then separated at the epidermal-dermal interface under magnification with a dissecting microscope. Only pieces that consisted entirely of epidermis or dermis were used.
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4

Multiparametric Immune Cell Profiling

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Hind paw tissue was collected using a 6mm biopsy punch. Tissue was placed in dissociation media containing Dispase 2 at 1.25 mg/mL (Sigma-Aldrich), Collagenase 2 at 2 mg/mL (Thermo Fisher Scientific) and Collagenase 4 at 2mg/mL (Thermo Fisher Scientific) and allowed to incubate at 37°C for approximately 75 mins. Live versus Dead cells were stained using Live/Dead Fixable Aqua Dead Cell Stain Kit (Thermo Fisher).
The following antibodies were from BioLegend: CD45-FITC (Cat. 103108), Cd11b-PE/Dazzle (Cat. 101256), Ly6C-APC (Cat. 128016), Ly6G-BV421 (Cat. 127628). Cells were treated with CD16/CD32 Fc Block (Cat.101320) 10 min before the addition of specific antibodies. Data were collected using a CytoFLEX LX (Beckman Coulter), and the data were analyzed using FlowJo (TreeStar). Mast cells were gated as live c-Kit+ FcεRI+, neutrophils were gates as live CD11b+Ly6G+, monocytes were gated as live CD11b+Ly6GLy6C+.
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5

Comprehensive Bone Marrow Cell Isolation

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Bone marrow (BM) cells were flushed from the tibia and femur bones with PBS (2%FBS+antibiotics) and filtered through a 70 μm strainer. After centrifugation, BM cells were resuspended in red blood cell (RBC) lysis buffer (TONBO) for RBC lysis. To analyze the immune cells in the PB, 60 μL of blood was harvested and lysed in the RBC lysis buffer.
To obtain the BM niche cells, the muscle tissue on the bone was completely removed before flushing the BM cells. The remaining bones were crashed into fragments and digested in DMEM medium containing 1 mg/mL Collagenase 1 (Sigma), 1 mg/mL Collagenase 2 (Thermo Fisher), 4 mg/mL Dispase 2 (Sigma-Aldrich), 0.1 mg/ml DNase 1 (Sigma-Aldrich), 1 mg/mL BSA, 1% HEPES, 1mM EDTA and antibiotics for 45 min at 37°C. Flushed BM cells also incubate in the same digest buffer for 15 min at 37°C (only when isolating niche cells). After digestion, bone cells and BM cells are filtered through a 70 μm strainer, resuspended in RBC lysis buffer, and combined into one (per mouse) for subsequent analysis.
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6

Isolation of Liver Macrophages

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Liver tissues were homogenized in 200 U mg−1 type 1 collagenase (Worthington Biochemical), 1 mg ml−1 dispase 2 (Sigma) and 0.5 mg ml−1 DNase 1 (Sigma) using a GentleMacs Tissue Dissociator (Miltenyi Biotec). The single-cell suspension was filtered through a 70-μM filter. The washed cells were incubated with biotinylated anti-F4/80 antibody (1:25 dilution; clone BM8; BioLegend) followed by magnetically coupled streptavidin microbeads (Miltenyi Biotec). F4/80+ cells were positively selected by magnetic separation (Miltenyi Biotec) to >97% purity. The flow-through fraction containing the non-macrophages was saved for analysis.
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7

Isolation of Lymphocytes and Neural Cells

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Cell extraction from tissues was modified according to the described protocol60 (link). For lymphocyte extraction, organs were digested for 30–60 minutes at 37 °C, and shaken at 240 rpm in HBSS containing 1 mg/ml Collagenase Type I (Life Technologies). Digested slurry was filtered and washed through a 70 μM mesh filter and resuspended in Percoll (GE Healthcare) diluted to 90% using HBSS. Layers of 60% and 37% Percoll were then sequentially overlayed on the 90% cell-Percoll mix. Cell separation was accomplished by centrifugation at 4 °C, 500 × g for 18 minutes with the brakes off. Cells were washed and resuspended in staining buffer containing 5% FBS in PBS in preparation for flow cytometry. Neural cells extraction was performed using previously described methods60 (link). Briefly, cells were digested using 0.8 mg/ml Dispase 2 (Sigma), 0.2 mg/ml collagenase P (Sigma), and 0.1 mg/ml DNase I (Sigma). Density separation of cells was done in one step using only 40% Percoll, and subsequent pelleted cells were filtered and washed through a 100 μM filter before preparation for flow cytometry.
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8

Isolation and Culture of Neural Stem Cells from Young Adult Mouse Dentate Gyrus

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NSCs were isolated from the young adult 8–10 weeks old DG, mechanically dissociated and enzymatically digested for 30 min at 37 °C in DMEM/F‐12 (#C11330500BT, Gibco, Grand Island, USA) media containing 10 mg mL−1 Papain (#LK003178, Worthington Biochemicals, Lakewood, USA), 20 mg mL−1 Dispase II (#04942078001, Sigma‐Aldrich, St. Louis, MO, USA), and 1 mg mL−1 DNase I (#DN25, Sigma‐Aldrich, St. Louis, MO, USA) based on published methods. Cells were then plated in neurobasal media containing neurobasal (#21103‐049, Gibco, Grand Island, USA), supplemented with B27 (#17504‐044, Gibco, Grand Island, USA), l‐glutamic acid (#G3126, Sigma‐Aldrich, St. Louis, MO, USA), and penicillin streptomycin (#03‐031‐1BCS, Biological Industries, Kibbutz Beit‐Haemek, Israel). Media was changed every 2 days. About 4 weeks later, neurospheres would be formed and then passaged for further study. The PDGF‐BB (100 ng mL−1) was added in culture for 36 h. Characterization of neural stem/progenitor cell cultures was evaluated by immunofluorescent staining with the specific neural stem cell markers neuroepithelial stem cell protein (Nestin).
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9

Intestinal Epithelial and Mesenchymal Cell Isolation

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The intestine was dissected, flushed, opened longitudinally and then cut into 1 cm pieces. The tissues were incubated in HBSS containing 1 mM EDTA, 1 mM DTT, 0.2% FBS, 4–5 times, 10 min each, at 37 °C, 200 rpm. Epithelial cells were released by vigorous shaking, passed through a 70 μm strainer, washed and immediately lysed for RNA isolation. After epithelial cell removal, the remaining stromal part of the intestine was lysed for RNA isolation. For Drop-seq analysis or for FACS-sorting of mesenchymal cells the tissues were processed as above and then incubated in DMEM 10% FBS containing Collagenase XI (300 units/ml, Sigma, C7657), Dispase II (0.1 mg/ml, Sigma, D4693) and DNase II Type V (50 units/ml, Sigma, D8764) for 1 h, at 37 °C, 200 rpm. Cells released after vigorous shaking were passed through a 70 μm strainer and washed with 2% sorbitol. Such cell preparations were directly processed by Drop-seq or by flow cytometry as described below.
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10

Isolation and Culture of Primary Mouse Osteoblasts

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The experimental procedures were approved by the Animal Committee of Tokyo Medical and Dental University. Primary osteoblast-like cells were collected from the cranial bones of neonatal littermates of C57BL/6 J mice (Sankyo Labo Service Co. Tokyo, Japan) and cultured as previously described [12 (link)]. In brief, the cranial bone was carefully cut up and digested with 0.1% collagenase X (Wako Pure Chemical Industries Ltd., Osaka, Japan), 0.1% dispase II (Sigma-Aldrich, St. Louis, MO, USA), and 0.05% trypsin–EDTA (Sigma-Aldrich, St. Louis, MO, USA) for 10 min at 37 °C. The suspension was then centrifuged to remove the supernatant, and the precipitate was resuspended and seeded in cell culture flasks (Corning, NY, USA) with alpha-Modified Eagle’s Medium (Sigma-Aldrich, MO, USA) medium containing 10% fetal bovine serum (Sigma-Aldrich, MO, USA) in an incubator with 5% CO2 at 37 °C.
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