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4 protocols using siglo green

1

Transfection and ROS Measurement in MEFs

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Genetran (Biomiga) was used to transfect HEK239T cells with miR-34c-minigene and pCDNA3-AblPPn plasmid DNA (Tu et al., 2015 (link)). Transfected cells and their media (for EV isolation) were collected 24 h after transfections. RNAiMAX was used to transfect MEFs with control mimic (CGGUACGAUCGCGGCGGGAUAUC) and miR-34c mimic (AGGCAGUGUAGUUAGCUGAUUGC) (Sigma). The transfection efficiency was ∼80%, as determined by siGLO green (Dharmacon). The ROS levels in live transfected cells were measured at 24 h posttransfection as described above.
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2

In Vitro Erythroid Differentiation of Hematopoietic Progenitors

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10 MPP3 and MPP4 cells were sorted into 96-well U-bottom plates. Cells were cultured for 10 d in Stempro-34 SFM (Gibco) supplemented with 10% StemPro Nutrient Supplement and cytokines SCF (50 ng/ml; Peprotech), IL-3 (5 ng/ml; Peprotech), Erythropoietin (EPO; 2 U/ml; BioLegend), IL-6 (10 ng/ml; Peprotech), and GM-CSF (10 ng/ml; Peprotech). Media with cytokines were refreshed on day 6. Differentiation was assessed by flow cytometry on days 10–12 (see Table S1 for antibody panel). Cultures were maintained at 37°C at 5% CO2. Lineage-negative cells from Ebf1WT and Ebf1KO mice were transfected with DharmaFECT1 (Dharmacon), with 25 nM control non-targeting or Cebpa siRNA (D-001810-10-05, L-040561-00-0005; Dharmacon) together with 25 nM siGLO Green (Dharmacon). After 48–72 h, 10 MPP3 and MPP4 siGLO Green-positive cells were sorted into 96-well U-bottom plates as described above.
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Quantifying Cellular Fluorescence in PC-3 Cells

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PC-3 cells were stained with fluorescence nuclear staining (Hoechst nuclei stain; 2.6 µg/ml; Invitrogen; Thermo Fisher Scientific, Inc.) for 10 min at 37°C. The adherent cell cytometry system, Celigo® (analyzed by Application Programing Interface, version 1.0, software), allowed rapid quantification of cellular fluorescence expression as previously described (21 (link)). siGLO Green Transfection Indicator (50 nM, Dharmacon Inc., Lafayette, CO, USA) was transfected into PC-3cells with DharmaFECT 1 (0.15 µg/100 µl well, Dharmacon Inc.). After 24 h, cells were washed with 1X PBS and stained with Hoechst nuclei stain (2.6 µg/ml; Invitrogen; Thermo Fisher Scientific, Inc.). Plates were analyzed using the adherent cell cytometer equipped with bright field and fluorescent channels: A blue 4′,6-diamidino-2-phenylindole filter for the Hoechst nuclei stain and a green filter for the siGLOGreen (Dharmacon Inc.). Gating parameters were adjusted for each fluorescence channel to exclude background and other non-specific signals. The Celigo® system provided a gross quantitative analysis for each fluorescence channel and individual well, including total count and average integrated red fluorescence intensity of gated events.
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4

c-Met Knockdown in SCCOHT-1 Cells

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For c-Met knock-down a transfection protocol was applied according to the manufacturer's instructions (Dharmacon, GE Healthcare, Uppsala, Sweden) using c-Met small interfering RNA (siRNA). Briefly, SCCOHT-1 cells were transfected with 25 nM c-Met siRNA (siGENOME human MET SMARTpool, cat. #D-003156-02) or with 25 nM of a non-targeting control siRNA (non-targeting #3 control, cat. #D-001210-03, Dharmacon, GE Healthcare, Uppsala, Sweden) using a 1:1,000 dilution of the DharmaFECT 4 transfection reagent (Dharmacon) in transfection medium (RPMI-1640 medium supplemented with 2% (v/v) fetal calf serum, 100U/ml L-glutamine) for 24 h. For evaluation of the transfection efficiency, SCCOHT-1 cells were transfected with 25 nM of the green fluorescing siGLOgreen (cat. #D-001630-01, Dharmacon). Thereafter, the cells were washed and cultured in normal growth medium.
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