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256 protocols using goat anti rabbit igg

1

Immunohistochemical Analysis of Cell Proliferation and Apoptosis

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Paraffin-embedded sections were deparaffinized, rehydrated, then steamed for 30 min in citrate buffer for antigen retrieval, after blocking 5% goat serum in Tris-buffered saline with 0.05% Tween 20. Sections were incubated with primary antibodies against either Ki-67 (1:100, ThermoFisher Scientific, Waltham, MA, USA) or Phospho-S6 Ribosomal Protein (1:400, Cell Signaling Technology). Horse-radish peroxidase-conjugated secondary antibodies (rabbit anti-goat IgG 1:200, Abcam, Cambridge, MA, USA, and goat anti-rabbit IgG, 1:100: Abcam) followed by the SignalStain DAB Substrate Kit (Cell Signaling Technology) were used for detection. Nuclear counterstaining was performed using hematoxylin. For apoptosis detection, ileal sections were stained with terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) using the In Situ Cell Death Detection Kit, TMR red (Roche Diagnostics, Indianapolis, IN, USA), per manufacturer’s instructions. Sections were mounted with VECTASHIELD Antifade Mounting Medium (Vector Laboratories, Burlingame, CA, USA) containing DAPI (4′,6-diamidino-2-phenylindole) as a nuclear stain. Slides were visualized with the C1 laser scanning Confocal Microscope System (Nikon, Melville, NY, USA), and analyzed using ImageJ.
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2

Rapid Leptospira Serodiagnosis Using Dipstick

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The rhKU_Sej_LRR_2271 and LipL32 (50 µg/mL) were applied to nitrocellulose membranes (Bio-Rad, Hercules, CA, USA) using a paintbrush. The membranes were dried at room temperature for 30 min, blocked with 3% BSA in phosphate-buffered saline, pH 7.4 (PBS) for 30 min, and washed twice with PBS (pH 7.4) containing 0.05% Tween 20 (PBST). Then, the membranes were incubated with each rabbit hyperimmune sera against Leptospira spp. (Table 1) and the rabbit control serum at a dilution of 1:100 for 1.5 h and washed with PBST. The membranes were incubated with goat anti-rabbit IgG (Abcam, Cambridge, UK) conjugated with gold nanoparticles (Kestrel Bioscience, Pathumthani, TH) at a dilution of 1:20 for 30 min and washed with distilled water before observing the red lines on the membranes. The rhKU_Sej_LRR_2271 was also preliminarily tested with dog plasma samples (6 positive and 2 negative samples, confirmed by the MAT, LipL32 ELISA, and rrs real-time PCR assay). The protocol was modified from the rabbit hyperimmune serum assay using goat anti-dog IgG (Abcam, Cambridge, UK) conjugated with gold nanoparticles instead of goat anti-rabbit IgG. The antibody ratio to the volume of colloidal gold was 0.01 mg of antibody to 1 mL of colloidal gold.
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3

Immunofluorescence Analysis of NOX4 Expression

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CIF staining with stromal markers such as α-SMA and FSP-1 was used to confirm the expression of NOX4 in GBC stroma. The above IHC samples were permeabilized in PBS containing 10% methanol for 30 min, washed in PBS, and sealed with PBS containing 3% FBS for 1 h. The M.O.M kit (Vector Laboratories, Inc., USA) was used to block Mouse IgG according to the manufacturer’s instruction. For CIF staining of NOX4 and α-SMA or FSP1, the sections were respectively incubated with rabbit anti-NOX4 (1:500; GeneTex, USA) and mouse anti-α-SMA (1:200; Abcam, UK) or mouse anti-FSP-1 (1:100; Abcam, UK) at 4 °C overnight. Then, the sections were incubated with corresponding secondary antibodies, goat anti-rabbit IgG (1:1000; Abcam, UK) for detecting NOX4 expression, goat anti-mouse IgG (1:200; Abcam) for α-SMA, goat anti-rabbit IgG (1:200; Abcam) for FSP1. Finally, the sections were washed in PBS and stained with diamidine phenylindole (DAPI) for 5 min, and observed under an immunofluorescence microscope.
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4

Immunoblotting of SMC Marker Proteins

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Primary antibodies such as stem cell marker CD44 (R&D Systems), early-stage SMC marker SM22-α (Abcam, Cambridge, UK), mid-stage SMC marker caldesmon (Sigma-Aldrich), late-stage SMC marker smooth muscle myosin heavy chain-11 (MYH11, Abcam, Cambridge, UK), and loading control β-actin (Sigma-Aldrich, St. Louis, MO, USA) were incubated at room temperature for 1 h or overnight at 4 °C. After primary antibody incubation, the membrane was washed 3× for 5 min in Tris-buffered saline (Bio-Rad, Hercules, CA, USA) with 0.1% Tween-20 (Fisher Scientific, Hampton, NH, USA) (TBST). Following the washes, respective horse-radish-peroxidase-conjugated secondary antibody was applied to the membrane. Secondary antibodies included: goat anti-rabbit IgG (Abcam, Cambridge, UK), rabbit anti-goat IgG (Abcam, Cambridge, UK), and goat anti-mouse IgG (Abcam, Cambridge, UK).
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5

Purification and Analysis of hBMP-2

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Periplasmic hBMP-2 and samples from the purification steps were analyzed by 15% polyacrylamide gel electrophoresis (SDS-PAGE) under non-reducing conditions, as previously described, Coomassie Brilliant Blue G-250 being used for the staining [31 (link)]. For Western blotting, the semi-dry transfer technique on nitrocellulose membrane was used, with anti-hBMP-2 affinity-purified rabbit IgG, 1:2000 (Biovision, Milpitas, CA, USA) and goat anti-rabbit IgG conjugated to horseradish peroxidase (1:5000). Proteins were visualized with Luminata Forte (Merck, Burlington, MA, USA) on CL-Xposure TM Film (Thermo Scientific, Rockford, IL, USA).
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6

Comparative Analysis of Recombinant BMP-2

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E. coli-derived met-hBMP-2 (GenScript) and CHO-derived hBMP-2 (Infuse®) were analyzed under reducing and non-reducing conditions (Soares et al. 2000 (link)). Coomassie Brilliant Blue G-250 was used for the staining. For Western blotting, the semi-dry transfer technique was utilized on a nitrocellulose membrane, with anti-hBMP-2 affinity-purified rabbit IgG (1:2000) (Biovision, Milpitas, CA, USA) and goat anti-rabbit IgG conjugated to horseradish peroxidase (1:5000). Protein visualization was performed with Luminata Forte (Merck, Burlington, MA, USA) on X-ray film (CL-Xposure™ Film, Thermo Scientific, Rockford, IL, USA).
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7

Western Blot Analysis of Bacterial Virulence Factors

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The primary antibodies used for Western blot analysis were as follows: rat anti-integrin β1 clone AIIB2 (Merck, MABT409), rabbit anti-integrin α5 clone 5E18 ZooMAb (Sigma-Aldrich, ZRB1122-25UL), mouse anti-CD15s (sialyl Lewisx) (Santa Cruz, sc-32243), mouse anti-CagA (Santa Cruz, sc-28368), mouse anti-CagA phospho (Santa Cruz, sc-508), mouse anti-VacA (Santa Cruz, sc-32746), rabbit anti-p38 MAPK (Agrigo, ARG55258), rabbit anti-p38 MAPK phospho (Agrigo, ARG51850) rabbit anti-Cox-2 (Agrigo, ARG56421), goat anti-ATF-2 (Arigo, ARG63122), rabbit anti-ATF2 phospho (Agrigo, ARG42620), mouse anti-GAPDH (Agrigo, ARG10112). Furthermore, the secondary antibodies were as follows: donkey anti-goat IgG antibody (Arigo, ARG65352), goat anti-rabbit IgG (pre-adsorbed to 10 nm gold) (Abcam, ab27234), goat anti-rabbit IgG H&L (HRP) (Merck Millipore, AP132P), goat anti-mouse IgG H&L cross-adsorbed secondary antibody (Alexa Fluor 488) (Thermo Fisher, A-11001), goat anti-mouse IgG (HRP) (Biosciences, 554002) Goat anti-Rat IgG (HRP) (Thermo Fisher, 31470), goat anti-rabbit (Alexa Fluor 488) (Invitrogen A11034), goat anti-rat IgG H&L cross-adsorbed secondary antibody (Alexa Fluor 488) (Thermo Fisher, A-11006), and goat anti-mouse IgM CFL488 (Santa cruz, sc-395784).
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8

Quantifying HIF1α in Stem Cells and Myocardium

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For Western blot (WB) analyses 50 µg proteins/sample were used either from cell culture (naive MSCs and after 7, 14, and 28 days after MiCi-HIF1α transfection) or from myocardial samples. Samples were loaded and separated on 7.5% acrylamide gels. After electrophoresis, proteins were blotted on PVDF membrane (#162–0261; Bio-Rad Laboratories, Hercules, California, U.S.) and stained with internal control ß-actin (Sigma-Aldrich, A2066, dilution 1/2000) and anti-HIF1α antibody (Abcam #51608, dilution 1/1000). As secondary antibody, goat anti-rabbit IgG (Abcam #6721, dilution 1/2000) was used. As a marker, a pre-stained Pageruler Standard was used (Thermo Scientific #26616). The blots were incubated with a luminol detection reagent (Thermo Fisher) and visualised on a Chemi-Smart system (Vilber Lourmat, Collégien, France) with optimised exposure times.
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9

ChIP Assay for HIF1α Binding

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A ChIP assay was performed with anti-HIF1α (2.5 µg) and goat anti-rabbit IgG (Abcam) using the Simple ChIPTM enzymatic chromatin IP kit (Cell Signaling Technology, Danvers, MA, USA) according to the manufacturer’s instructions. Subsequently, detection of the GBE1 promoter with HIFα-binding sites was performed by qPCR under the following conditions: 40 cycles of denaturation at 95 °C for 10 s and annealing at 58 °C for 30 s, followed by extension at 60 °C for 30 s. The following primers were used: GBE1-(-1620) forward, 5′-AGTGGCCTGCATAAGAGTGACA-3′ and reverse, 5′-AATAAAAACCCGAAGCAGGACA-3′; GBE1-(-968) forward, 5′-AATAGTTGTCCTGCTTCGGG-3′ and reverse, 5′-ATTAATCAGCCGTGGGCCTT-3′; and GBE1-(-728) forward, 5′-TCACTGTAAGTGGCAGAGTGG-3′ and reverse, 5′-TCCTAAGTTTGCCAGGTCACG-3′. The fold enrichment was normalized to the level of IgG and quantified using the 2−ΔΔCq method.
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10

Immunohistochemical Analysis of Tumor Markers

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The tumor tissue sections (5 µm thick) were made by incision using a microtome (RM2125RT; Leica, Wetzlar, Germany). These were immediately fixed with 4% paraformaldehyde and embedded in paraffin. The standard procedures of Deparaffinization, rehydration, and antigen retrieval were performed. Next, the sections were incubated with the primary antibodies at 4 °C overnight. Then, incubation with secondary antibodies was performed for 30 min at room temperature. After washing with PBS, the sections were stained with diaminobenzidine (DAB, Sigma-Aldrich) and counterstaining was carried out using hematoxylin (Sigma-Aldrich). The pictures were recorded using a light microscope (Olympus BX 51). The primary antibodies Anti-E-cadherin (ab40772, 1/500), anti-N-cadherin (ab18203, 1/1,000), anti-Vimentin (ab92547, 1/500), anti-CD44 (ab157107, 1/1,000), anti-Oct-4 (ab181557, 1/1,000), anti-c-met (ab51067, 1/250), and anti-Nanog (ab109250, 1/250), and secondary antibodies (Goat Anti-rabbit IgG, HRP-linked Antibody, ab205718, 1/2,000) were purchased from Abcam.
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