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34 protocols using anti cd4 pacific blue

1

Phenotypic Analysis of T-Cell Subsets

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CD4+ and CD8+ T cells were identified by size, granularity, and staining with antibodies to CD4 or CD8. The following antibody-fluorochrome conjugates (and isotype controls) were used: anti-CD4 (Pacific Blue, Becton Dickinson (BD) Pharmingen, San Diego, CA), anti-CD8 (Peridinin- chlorophyll-protein Complex, PerCP, Franklin Lakes, NJ), anti-Ki-67 (phycoerythrin, PE, BD Pharmingen), anti HLA-DR (fluorescein isothiocyanate, FITC, BD Biosciences), and anti-CD38 (PE, BD Biosciences). For analysis of intracellular Ki-67, cells were incubated with FACS Per-meabilizing Solution (BD Biosciences) for 15 minutes, washed and then stained with anti-Ki-67 antibody or with an isotype control antibody for 45 minutes in the dark. Cells were then washed and fixed with 1% formaldehyde and analyzed using an LSR II flow cytometer (BD).
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2

Multiparametric Flow Cytometry Analysis

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CD4+ and CD8+ T cells were identified by size, granularity, and staining with antibodies to CD4 or CD8. The following antibody-fluorochrome conjugates (and isotype controls) were used: anti-CD4 (Pacific Blue, Becton Dickinson (BD) Pharmingen, San Diego, CA), anti-CD8 (Peridinin-chlorophyll-protein Complex, PerCP, Franklin Lakes, NJ), anti-Ki-67 (phycoerythrin, PE, BD Pharmingen), anti HLA-DR (fluorescein isothiocyanate, FITC, BD Biosciences), and anti-CD38 (PE, BD Biosciences). For analysis of intracellular Ki-67, cells were incubated with FACS Permeabilizing Solution (BD Biosciences) for 15 minutes, washed and then stained with anti-Ki-67 antibody or with an isotype control antibody for 45 minutes in the dark. Cells were then washed and fixed with 1% formaldehyde and analyzed using an LSR II flow cytometer (BD).
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3

Multiparametric Flow Cytometry Analysis of T Cell Responses to TBEV

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T cell responses to TBEV were assessed using multi-color flow cytometry, and the monoclonal antibodies (mAbs) used were; anti-CD107a FITC, anti-CD4 Pacific Blue, anti-CD8 PerCP, anti-HLA-DR PerCP, anti-Ki67 FITC, anti-Ki67 Alexa Fluor 700, anti-Bcl2 PE, anti-CCR7 PE-Cy7, anti-MIP-1β PE, anti-CD14 BD horizon V500, anti-CD19 BD horizon V500, anti-perforin FITC and anti-granzyme B APC, anti-granzyme B PE-CF594 all from BD Biosciences (San Jose, CA). Anti-CD45RA APC-Cy7, anti TNF pacific blue, anti-IFN-γ Brilliant Violet 570, anti-CD27 Brilliant Violet 785, anti-CD27 Brilliant Violet 421, anti-Helios Pacific Blue, anti-T-bet Alexa Fluor 488, anti-T-bet PE-Cy7, anti-CCR7 Brilliant Violet 785, anti-CD279 Brilliant Violet 711, anti-CD27 biotin and anti-CD127 Brilliant Violet 570 were all from Biolegend (San Diego, CA). Anti-CD38 Alexa Fluor 700, anti-CD38 eFluor 650, anti-CD127 Alexa Fluor 780, anti-PD-1 (CD279) PE, anti-Eomes eFluor 660 and IgM eFluor 650 were all from eBioscience (San Diego, CA). Anti-CD4 Qdot 605, anti-CD8 Qdot705, anti-CD8 Qdot 605, Streptavidin-Qdot 585, anti-CD57 pure and Aqua Live/Dead were all from Invitrogen (Carlsbad, CA). Anti-CD3 ECD, anti-CD3 PE-Cy5, HLA-A2 CMV pp65 tetramer in PE and anti-CD56 ECD were from Beckman Coulter (Brea, CA). HLA-A2 ILLDNITTL tetramer in PE was kindly provided by the NIH Tetramer core facility.
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4

Comprehensive Immune Cell Profiling

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PBMCs, LNs, and tumor cell suspensions at 0.5x106 cells/sample were washed in PBS containing 2% FCS and 0.05% NaN3 (FACS-buffer). To investigate lymphocyte subtypes and their functions, staining was performed with fluorophore-conjugated antibodies: Blue Live/Dead stain, anti-CD4 Pacific-Blue, anti-CD8 APC, anti-CD19 APC-Cy7, and anti-CD56 PE (Becton Dickinson-BD, Franklin Lakes, NJ, USA). Cells were investigated with LSRFORTESSA (BD) and analyzed by using the FACS DIVA software (BD).
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5

Analyzing NK and T Cell Responses

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Responses of NK cells and T cells were assessed as described previously.15 (link) Briefly, cells were stained with fluorophore-labelled monoclonal antibodies to cell surface molecules, fixed, permeabilized and stained for intracellular molecules using a Cytofix/Cytoperm kit (BD Biosciences). Cells were analysed by flow cytometry on an LSR II (BD Biosciences). Samples with fewer than 100 NK cells in each subset were excluded. The following reagents were used: anti-CD56-phycoerythrin (PE) -Cy7, anti-CD16-allophycocyanin (APC) -H7, anti-CD4-Pacific Blue, anti-IFN-γ-e780, anti-IFN-γ-APC, anti-CD3-V500 and anti-CD69-phycoerythrin-cyanine5 (PE-Cy5) (all BD); anti-CD8-PE-Cy5, anti-CD25-PE, anti-IL-18Rα-PE, anti-CD62L-PE-Cy5, anti-CD57-e450 and anti-IL-2-APC (all e-Biosciences/Affimetrix, Hatfield, UK). Anti-IL-12Rβ2 monoclonal antibody was obtained from R&D Systems (Oxford, UK) and conjugated to PE-Cy5 using an Easylink PE/Cy5® Conjugation Kit (Abcam, Cambridge, UK).
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Isolation and Analysis of CD8+ T-cell-depleted PBMCs

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Peripheral blood mononuclear cells (PBMCs) were isolated from whole-blood samples using Ficoll-Paque Plus™ (GE Healthcare) and cryopreserved in liquid nitrogen. PBMCs were depleted of CD8 cells using anti-CD8 Ab-coupled magnetic beads and LD columns (Miltenyi Biotec GmbH, Germany), as previously described (17 (link)). CD8-depleted PBMCs were incubated overnight at 37°C in 5% CO2 in serum-free medium (AIM-V; Gibco) and resuspended at a final concentration of 2 × 106 cells/ml in AIM-V. The purity of CD8-depleted PBMCs in each sample was assessed by flow cytometry using anti-CD8-APC, anti-CD3-PE, anti-CD4-PacificBlue™, and 7-aminoactinomycin D (all purchased from BD Bioscience), which showed that purity of CD8-depleted PBMCs was >99%.
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7

Isolation of Memory B Cells and Tfh Cells

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PBMCs were stained with anti-human CD19-v450 (HIB19; BD Biosciences, San Jose, CA), CD27-APC (M-T271; BD Biosciences), CD38-PE (HIT2; BioLegend, San Diego, CA), CD20–fluorescein isothiocyanate (FITC) (2H7; BioLegend), and CD3-PerCP/Cy5.5 (HIT3a; BioLegend). CD3CD19+CD20+CD27+ memory B cells and CD3CD19lo/−CD20CD27++CD38++ plasmablasts were sorted directly into 1 ml of TRIzol reagent (Thermo Fisher Scientific) using a FACSAria Fusion cell sorter and BD FACSDiva 8.0.1 software (BD Biosciences) (fig. S6). For TFH cell isolation, frozen PBMCs were thawed and stained with anti–PD1-PE (no. 12-2799-41; Thermo Fisher Scientific), anti-CXCR5-BB515, anti-CD3 Alexa Fluor 700, anti–CD4-Pacific Blue, and anti-CD45RA PE-CF594 (no. BDB564625, no. BDB561027, no. BDB558116, and no. 562326; BD Biosciences, respectively) antibodies, and then CD3+CD4+CXCR5+CD45RA PD1++ TFH cells were sorted directly into 1 ml of TRIzol reagent (Fig. 2A).
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8

Generating TCR-transduced T-cells for Immunotherapy

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The TCR α and β chain usage of dNPM1-specific clone 6F11 and EBV-specific clone 20–16 were determined as described previously [13 (link),19 (link)]. Codon-optimized variable α and β chain sequences were synthesized and cloned in the MP71-TCR-flex retroviral vector containing murine–TCR-constant regions [20 (link)] by BaseClear. The constructs were transfected in phoenix-AMPHO packaging cells and the supernatants were harvested and stored at −80 °C. For TCR gene transfer, PBMCs from healthy individuals were thawed, resuspended in TCM and stimulated with T-cell TransAct (Miltenyi Biotec). After 2 days, cells were transduced with TCRs using the transduction protocol as described for cell lines. On day 11, TCR-transduced CD8 and CD4 T-cells were sorted by FACS using anti-CD8 PE (catalog 555367), anti-CD4 Pacific Blue (catalog 558116) and anti-mouse TCR β chain APC (catalog 553174) antibodies (BD Biosciences) and stimulated with TCM containing irradiated allogeneic PBMCs at a T-cell:feeder cell ratio of 1:5 and 0.8 μg/mL PHA. Experiments with TCR-transduced T-cells were performed 10–13 days after the second stimulation.
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9

Isolation and Characterization of CD8-Depleted PBMCs

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Peripheral blood mononuclear cells (PBMCs) were separated from whole-blood samples using Ficoll-Paque Plus™ (GE Healthcare) and were cryopreserved in liquid nitrogen, as previously described (23 (link)). PBMCs were thawed and depleted of CD8-positive cells using magnetic beads coupled with anti-CD8 antibody and LD columns (Miltenyi Biotec GmbH, Germany), as previously described (24 (link)). The depleted PBMCs were incubated overnight in serum-free medium (AIM-V; Gibco) at 37°C in 5% CO2. For use in ELISPOT assays, cells were resuspended at a final concentration of 2 × 106 cells/ ml in AIM-V. The purity and viability of CD8-depleted PBMCs in each sample was assessed using anti-CD8-APC, anti-CD3-PE, anti-CD4-PacificBlue™, and 7-aminoactinomycin D (BD Bioscience) and flow cytometry (23 (link)). After depletion, CD8-positive cells were <1%. Plasma and serum samples were stored at −20°C.
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10

Evaluating Allogeneic T Cell Response to mDC

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The capacity of immature or mDC to stimulate an allogeneic T cells response was determined by mixed lymphocyte reaction assay. Briefly, immature or mDC derived in the presence or absence of hCPC, were co-cultured with allogeneic CFSE-labeled PBLs in 6-well plates (Falcon, Cat. 353046) for 5 days at 300,000 PBLs per 60,000 DC (ratio5:1). Proliferation of CD4+, CD8+ T cell subsets was monitored by flow cytometry using anti-CD3-APC, anti-CD4-Pacific blue, anti-CD8-APC-H7 (BD Biosciences), anti-CD25-PE (Miltenyi Biotec), and 7-AAD.
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